Protein Alignment Polr1A and rpoC1

DIOPT Version :10

• Sequence 1: NP_523743.1
• Gene: Polr1A / 36617
• FlyBaseID: FBgn0019938
• Length: 1642
• Species: Drosophila melanogaster
• Sequence 2: NP_051050.1
• Gene: rpoC1 / 844784
• -ID: -
• Length: 680
• Species: Arabidopsis thaliana
• Alignment Length: 355
• Identity: 98/355 - (27%)
• Similarity: 152/355 - (42%)
• Gaps: 82/355 - (23%)

  Fly   300 LPVTPPRARPLNMV-GDMLKGNPQTDIYINIIENNHVLNVVLKYMKGG-------QEKLTEEAKA 356
            |||.||..||:..: |..|..:...::|..:|..|:.|..:|...:..       ||||.:||
plant   269 LPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEA-- 331

  Fly   357 AYQTLKGETAHEKLYTAWLALQMSVDVLLDVNM-SREMKSG-----EGLKQIIEKKSGLIRSHMM 415
                                    ||.|||..: .:.|:.|     :....:||.|.|..|..::
plant   332 ------------------------VDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLL 372

  Fly   416 GKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQ 480
            ||||:|:.|:||...|::::...|:|...|.:|        :....:|.::..    |..:|.
plant   373 GKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQTFVIRGLIRQ----HLASNI-- 423

  Fly   481 DKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARI 545
                              .:||..:...|..:..:.:.|:.|..:||||.|:||:..|...:..:
plant   424 ------------------GVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPIL 470

  Fly   546 LHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQD 610
            :.| :|..||...||.:|||||||:|..|.|.|..|:|||..|:....|.|.|..|.|:....||
plant   471 VEG-RTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQD 534

  Fly   611 HVI------SGVKLSIRGRFF---NREDYQ 631
            .:|      ||.:..|....:   ||::||
plant   535 MLIGLYVLTSGTRRGICANRYNPCNRKNYQ 564

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1A	NP_523743.1	RNAP_I_RPA1_N	18..982	CDD:259844	98/355 (28%)
		HMG-box_SF	1065..1119	CDD:438789
		RNAP_I_Rpa1_C	1166..1638	CDD:132722
rpoC1	NP_051050.1	rpoC1	1..675	CDD:214336	98/355 (28%)