Sequence 1: | NP_523743.1 | Gene: | RpI1 / 36617 | FlyBaseID: | FBgn0019938 | Length: | 1642 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_511124.1 | Gene: | RpII215 / 32100 | FlyBaseID: | FBgn0003277 | Length: | 1887 | Species: | Drosophila melanogaster |
Alignment Length: | 1755 | Identity: | 492/1755 - (28%) |
---|---|---|---|
Similarity: | 768/1755 - (43%) | Gaps: | 437/1755 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 LEFAVFTDQEIRKLSVVKVITGITFDAL---GHAIPGGLYDIRMGSYGRCMDPCGTCL-KLQDCP 76
Fly 77 GHMGHIELGTPVYNPFFI-KFVQRLLCIFCLHCYKLQMKDHE---CEIIML-----QLRLIDAGY 132
Fly 133 IIEAQELELFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLRTAITH 197
Fly 198 SALQRLGKKCRHCNKSMR------FVRYMHRRLVFYVTLADIKERVGTGAETGGQNKVIFADECR 256
Fly 257 RYLRQIYANYPELLKLLVP----VLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARPLNMVGDML 317
Fly 318 KGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAH---EKLYTAWLALQM 379
Fly 380 SVDVLLD---VNMSREM-KSGEGLKQI---IEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDE 437
Fly 438 IGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAK 502
Fly 503 LLLSNPKD-------GIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCK 560
Fly 561 AYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFF 625
Fly 626 NREDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAG 690
Fly 691 KNWNVSRPRPPICGTNPEGND--------LSESQVQIRNGELLVGVLDKQQYGATTYGLIH-CMY 746
Fly 747 ELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALE 811
Fly 812 LEDEP-PHDELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLM 875
Fly 876 VLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQ 940
Fly 941 DFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGL--D 1003
Fly 1004 I----------LKSKFFNDKFCADF-----------------LTQNATAI--LRPAQLQLMKDEE 1039
Fly 1040 QLAKV--------------QRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVE----VKRPNEIN 1086
Fly 1087 SK----TGRRRFDEGLLKLWKKADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERTRKLITD 1147
Fly 1148 YAKRKPALKETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGI 1212
Fly 1213 PRLREILMLASSNIKTPSMDIPIKPGQQHQAEKLR---INLNSVTLANLLEYVHVSTGLTLDPER 1274
Fly 1275 S---YEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILKVSNASRTTKIVVIDDKK 1336
Fly 1337 DADK----------------EDDNDLDNGDEVGRSKAKANDDDSSDDNDDDDATGVKLKQRKTDE 1385
Fly 1386 KDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGDDKAVERLLSNDMVKAYTYDKENHLW 1450
Fly 1451 CQVKLNLSVRYQKPDLTSIIRELAGKSVVH--QVQHIKRAIIYKGTD----DDQLLKTDGINIGE 1509
Fly 1510 MFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDG 1574
Fly 1575 TFQPLSRKGM-EHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638
Fly 1639 1638 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI1 | NP_523743.1 | RNA_pol_rpoA1 | 14..1009 | CDD:274106 | 316/1054 (30%) |
RNAP_I_RPA1_N | 18..982 | CDD:259844 | 302/1013 (30%) | ||
RNA_pol_Rpb1_5 | 936..1593 | CDD:282807 | 202/738 (27%) | ||
HMG-box | 1057..1119 | CDD:294061 | 10/69 (14%) | ||
RNAP_I_Rpa1_C | 1166..1638 | CDD:132722 | 141/500 (28%) | ||
RpII215 | NP_511124.1 | PRK08566 | 14..887 | CDD:236292 | 312/1034 (30%) |
RNAP_II_RPB1_N | 15..868 | CDD:259848 | 302/1015 (30%) | ||
RNA_pol_Rpb1_5 | 822..1420 | CDD:282807 | 201/737 (27%) | ||
RNA_pol_Rpb1_6 | 890..1071 | CDD:282801 | 34/218 (16%) | ||
RNAP_II_Rpb1_C | 1050..1468 | CDD:132720 | 148/527 (28%) | ||
TCRP1 | 1602..1880 | CDD:291605 | |||
RCR | <1789..1864 | CDD:304939 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45466354 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 293 | 1.000 | Inparanoid score | I87 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D11825at50557 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | otm51395 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR19376 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.900 |