Sequence 1: | NP_523743.1 | Gene: | RpI1 / 36617 | FlyBaseID: | FBgn0019938 | Length: | 1642 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_596300.1 | Gene: | nuc1 / 2540873 | PomBaseID: | SPBC4C3.05c | Length: | 1689 | Species: | Schizosaccharomyces pombe |
Alignment Length: | 1800 | Identity: | 642/1800 - (35%) |
---|---|---|---|
Similarity: | 950/1800 - (52%) | Gaps: | 304/1800 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC-LKLQDCPGHM 79
Fly 80 GHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYIIEAQELE-LFK 143
Fly 144 SEIVCQNTENLVAIKNG----------DMVHPHIAAMYKL----LEKNEKNSSNSTKTSCSLRTA 194
Fly 195 ITHSALQRL---------GKKCRHC---------------------NKSMRFVRYMH--RRLVFY 227
Fly 228 VTLADIKERVGTGAETGGQN-----------------------------KVIFADECRRYLRQIY 263
Fly 264 ANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYIN 328
Fly 329 IIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREM 393
Fly 394 KSG-------EGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYP 451
Fly 452 VPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGI---- 512
Fly 513 ----------KIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFD 567
Fly 568 GDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 632
Fly 633 LVFQGLSQLKKD-------IKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAG 690
Fly 691 KNWNVSRPRPPICGTNPEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVST 755
Fly 756 LLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDE 820
Fly 821 LVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMV 885
Fly 886 NTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGR 950
Fly 951 EGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFC 1015
Fly 1016 ADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKPAKLRAAFTHFS----EELREE 1076
Fly 1077 VEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYARCP---DPTVAVYKQDLYYGSVS 1138
Fly 1139 ERTRKLITDYAKRKP-----ALKETIAD-----------IMRVKTIKSLAAPGEPVGLIAAQSIG 1187
Fly 1188 EPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPG-QQHQAEKLRINLN 1251
Fly 1252 SVTLANLLEYVHVS---TGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQL 1313
Fly 1314 IRAILKVSNASRTTKIVVIDDKKDADKEDD-----------NDLDNGDEVGRSKAKANDDDSSDD 1367
Fly 1368 NDDDDATGVKLKQRKTDEKDYDDPDDVE-----ELHDANDDDDEAEDEDDEE--KGQDGNDNDGD 1425
Fly 1426 DKAVER-------------------LLSNDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIR 1471
Fly 1472 ELAGKSVVHQVQHIKRAIIYKGTDDDQL-----LKTDGINIGEMFQHNKILDLNRLYSNDIHAIA 1531
Fly 1532 RTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSF 1596
Fly 1597 ESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI1 | NP_523743.1 | RNA_pol_rpoA1 | 14..1009 | CDD:274106 | 427/1097 (39%) |
RNAP_I_RPA1_N | 18..982 | CDD:259844 | 408/1068 (38%) | ||
RNA_pol_Rpb1_5 | 936..1593 | CDD:282807 | 248/725 (34%) | ||
HMG-box | 1057..1119 | CDD:294061 | 10/65 (15%) | ||
RNAP_I_Rpa1_C | 1166..1638 | CDD:132722 | 185/517 (36%) | ||
nuc1 | NP_596300.1 | RpoC | 9..1088 | CDD:223164 | 432/1164 (37%) |
RNAP_I_RPA1_N | 15..1048 | CDD:259844 | 408/1069 (38%) | ||
RNA_pol_Rpb1_5 | 1002..1636 | CDD:282807 | 248/726 (34%) | ||
RNAP_I_Rpa1_C | 1182..1680 | CDD:132722 | 185/517 (36%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 347 | 1.000 | Domainoid score | I178 |
eggNOG | 1 | 0.900 | - | - | E1_COG0086 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H7033 | |
Inparanoid | 1 | 1.050 | 1017 | 1.000 | Inparanoid score | I33 |
OMA | 1 | 1.010 | - | - | QHG54249 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0005035 | |
OrthoInspector | 1 | 1.000 | - | - | oto101918 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101773 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR19376 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1172 |
SonicParanoid | 1 | 1.000 | - | - | X3561 | |
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.860 |