DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI1 and nuc1

DIOPT Version :9

Sequence 1:NP_523743.1 Gene:RpI1 / 36617 FlyBaseID:FBgn0019938 Length:1642 Species:Drosophila melanogaster
Sequence 2:NP_596300.1 Gene:nuc1 / 2540873 PomBaseID:SPBC4C3.05c Length:1689 Species:Schizosaccharomyces pombe


Alignment Length:1800 Identity:642/1800 - (35%)
Similarity:950/1800 - (52%) Gaps:304/1800 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC-LKLQDCPGHM 79
            ::|.::...::.|:||.:::..:..|.|.|...|||||:.:|.|.: ...|.|| |..:.||||.
pombe    14 VKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLK-NSVCATCHLDERYCPGHF 77

  Fly    80 GHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYIIEAQELE-LFK 143
            |||.|..|.|:|.|...:..||...||:|:..::...:..:...:|:|:|.|.:.|::.:| :..
pombe    78 GHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLDYGLLNESEMVENVSL 142

  Fly   144 SEIVCQNTENLVAIKNG----------DMVHPHIAAMYKL----LEKNEKNSSNSTKTSCSLRTA 194
            :|.:.:|: |...:::|          |.:....|.:.::    :.|:..:|..:......|.|.
pombe   143 TEAIIKNS-NGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRDEFVAKSIADSRQNAHIDAQLTTL 206

  Fly   195 ITHSALQRL---------GKKCRHC---------------------NKSMRFVRYMH--RRLVFY 227
            :.|...:.:         .|:|.:|                     .|:::|:....  |..|..
pombe   207 LLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEGFAKIFEIPLSGKNLQFMEQTGKIRSDVLR 271

  Fly   228 VTLADIKERVGTGAETGGQN-----------------------------KVIFADECRRYLRQIY 263
            .|.....|..|...::...|                             |.:.:.|.|.:||:::
pombe   272 DTSKKHHEDEGYDGDSDSSNESEVEGIDLFEEDPNPLKNKSKSPIAHGAKYMTSTEVRNHLRRLF 336

  Fly   264 ANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYIN 328
            .....:|..|..        ..:|..:..|:||:..:.|.|.|.||.:.:||.:..|.|.::...
pombe   337 VKENVVLSRLYA--------HKRGKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTR 393

  Fly   329 IIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREM 393
            |::::   ..:....|....::..:.|...:  :...|.|.|..|::.||..|:.|:|.|  |..
pombe   394 ILQSS---IQIASLSKDSTVEVNPDEKEGLE--RRSRAFELLINAFVQLQHDVNSLIDSN--RNP 451

  Fly   394 KSG-------EGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYP 451
            .||       .|:|||:|||.||.|.||||||||||||:||:|||||..:|||:|.:||.||:||
pombe   452 SSGGQSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYP 516

  Fly   452 VPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGI---- 512
            .|||.:|..|:|..|:|||...|||::||:::|....:......:|.:||..||: |:..:    
pombe   517 EPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLT-PQSNLISSP 580

  Fly   513 ----------KIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFD 567
                      |.|:|||.|||:|:|||||:|||||:|.||||||.||||.|:||:||.:||||||
pombe   581 YSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFD 645

  Fly   568 GDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 632
            |||||.|:|||..||:||..:.|..|.||||..|.||.|||||||:.||.|:.:..|:.|::|||
pombe   646 GDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQ 710

  Fly   633 LVFQGLSQLKKD-------IKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAG 690
            |:||.   ||.|       ||.|||.|.:|.:.|:||||:|::::|:.|.....:||.|.||:.|
pombe   711 LLFQA---LKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPG 772

  Fly   691 KNWNVSRPRPPICGTNPEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVST 755
            |.|:               .|..|..|...:||||.|:|||..:||:.:||:|.::||||.|::.
pombe   773 KYWS---------------PDSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAG 822

  Fly   756 LLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDE 820
            .||:..:::||.:.|:.|||..:.|:.:.:..|..||:::...::.|..|.:..:.|..:.|...
pombe   823 RLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIAL 887

  Fly   821 LVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMV 885
            |...:|..|..|.|.:. ||...|..::|.|:.|.:.|:|.||:||||.|::|.|.:||||||.|
pombe   888 LNANLEEVYRDDEKLQG-LDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNV 951

  Fly   886 NTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGR 950
            |..||||||||.||||:|.|||:||||||||..:|||.||||||..||:|||.||:::|||||||
pombe   952 NVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGR 1016

  Fly   951 EGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFC 1015
            ||||||||||||||||||||:||||||.|.||.||||||.|:|||.||||.||:.|         
pombe  1017 EGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTK--------- 1072

  Fly  1016 ADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKPAKLRAAFTHFS----EELREE 1076
                                            :||:..:|             ||    :.|.::
pombe  1073 --------------------------------QKHLTQFE-------------FSAKNYKSLIQK 1092

  Fly  1077 VEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYARCP---DPTVAVYKQDLYYGSVS 1138
            .:||                   .:....|:|..:.|.||..:.|   ||.:..|....|.||||
pombe  1093 YKVK-------------------SVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPSRYLGSVS 1138

  Fly  1139 ERTRKLITDYAKRKP-----ALKETIAD-----------IMRVKTIKSLAAPGEPVGLIAAQSIG 1187
            |:.::.:.:|.::.|     :.||:..|           :|:::..:||..|||.||::|:||||
pombe  1139 EKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIG 1203

  Fly  1188 EPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPG-QQHQAEKLRINLN 1251
            |||||||||||||||.|..||||||||||||:|.||:||:||:|.:.:..| ...:|......:|
pombe  1204 EPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVN 1268

  Fly  1252 SVTLANLLEYVHVS---TGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQL 1313
            .:.|:.::..|.|:   :|...| |:|..|.:|.....|:.|:::|||..:.|.......|.|.|
pombe  1269 KLVLSEVVRQVRVTEKISGQGSD-EQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKIL 1332

  Fly  1314 IRAILKVSNASRTTKIVVIDDKKDADKEDD-----------NDLDNGDEVGRSKAKANDDDSSDD 1367
            .|.|......|:        .:|...|:|.           .|:|.....||::....|      
pombe  1333 NRIIKSYLAKSK--------QRKSGGKDDTVPEVGQALKPLEDIDEAPIEGRAQEALED------ 1383

  Fly  1368 NDDDDATGVKLKQRKTDEKDYDDPDDVE-----ELHDANDDDDEAEDEDDEE--KGQDGNDNDGD 1425
             :|:|||..|:..|......|:.||:.:     :|..:|..:|...||:::|  |..:...:..:
pombe  1384 -EDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDESVSDFKE 1447

  Fly  1426 DKAVER-------------------LLSNDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIR 1471
            .|.:|:                   :|||  .|...:|..|..|..|:|...:..:|..:.|::.
pombe  1448 RKLLEKQNTVSISERRELQLKTAKEILSN--CKHLDFDYVNGEWATVELVFPINTEKLLMVSLVE 1510

  Fly  1472 ELAGKSVVHQVQHIKRAIIYKGTDDDQL-----LKTDGINIGEMFQHNKILDLNRLYSNDIHAIA 1531
            :...::|:|::..|.|.  :....|..|     :.|:|:|:..:::....:.:|.:|:|||.||.
pombe  1511 KACSETVIHEIPGITRC--FSKPPDSALDTVPKVITEGVNLKAIWEFYNEISMNDIYTNDIAAIL 1573

  Fly  1532 RTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSF 1596
            |.||:|||...||.|||:||.||||.||.||||||||||||:|.::..:|.|:|:::||..:|||
pombe  1574 RIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIEYNTSPFAKMSF 1638

  Fly  1597 ESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641
            |::..||..||..|..|:||:|||||:||.....|||:|::.|.:
pombe  1639 ETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFTPV 1683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI1NP_523743.1 RNA_pol_rpoA1 14..1009 CDD:274106 427/1097 (39%)
RNAP_I_RPA1_N 18..982 CDD:259844 408/1068 (38%)
RNA_pol_Rpb1_5 936..1593 CDD:282807 248/725 (34%)
HMG-box 1057..1119 CDD:294061 10/65 (15%)
RNAP_I_Rpa1_C 1166..1638 CDD:132722 185/517 (36%)
nuc1NP_596300.1 RpoC 9..1088 CDD:223164 432/1164 (37%)
RNAP_I_RPA1_N 15..1048 CDD:259844 408/1069 (38%)
RNA_pol_Rpb1_5 1002..1636 CDD:282807 248/726 (34%)
RNAP_I_Rpa1_C 1182..1680 CDD:132722 185/517 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 347 1.000 Domainoid score I178
eggNOG 1 0.900 - - E1_COG0086
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7033
Inparanoid 1 1.050 1017 1.000 Inparanoid score I33
OMA 1 1.010 - - QHG54249
OrthoFinder 1 1.000 - - FOG0005035
OrthoInspector 1 1.000 - - oto101918
orthoMCL 1 0.900 - - OOG6_101773
Panther 1 1.100 - - LDO PTHR19376
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1172
SonicParanoid 1 1.000 - - X3561
TreeFam 1 0.960 - -
1413.860

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