Sequence 1: | NP_523743.1 | Gene: | RpI1 / 36617 | FlyBaseID: | FBgn0019938 | Length: | 1642 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031751156.1 | Gene: | polr1a / 100158635 | XenbaseID: | XB-GENE-1005160 | Length: | 1784 | Species: | Xenopus tropicalis |
Alignment Length: | 1719 | Identity: | 736/1719 - (42%) |
---|---|---|---|
Similarity: | 1049/1719 - (61%) | Gaps: | 119/1719 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMG-SYGRCMDPCGTCLK-LQDCPGH 78
Fly 79 MGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYIIEAQELELFK 143
Fly 144 SEIVCQN---TENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSN-STKTSCSLRTAITHS--ALQR 202
Fly 203 LGKKCRHCNKSMRFVRYMHR-RLVFYVTLADIKERVGTGAETGGQNKVIFADEC--RRYLRQIYA 264
Fly 265 NYPELLKLLVPVLGLSNTDLTQG------DRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQT 323
Fly 324 DIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQ----------------TLKGETAHEKLYT 372
Fly 373 AWLALQMSVDVLLDVNMSREM-KSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVD 436
Fly 437 EIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLA 501
Fly 502 KLLLSNPKDG-----IKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKA 561
Fly 562 YNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626
Fly 627 REDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGK 691
Fly 692 NWNVSRPRPPICGTNPEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTL 756
Fly 757 LLTAFTKVFTFFLQL-EGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDE 820
Fly 821 LVEKMEAAYV-KDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSM 884
Fly 885 VNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAG 949
Fly 950 REGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDK- 1013
Fly 1014 FCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKP--AKLRAAFTHFSEELREE 1076
Fly 1077 VEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERT 1141
Fly 1142 RKLITDYA----KRKPALK-------ETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTL 1195
Fly 1196 NTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQQ--HQAEKLRINLNSVTLANL 1258
Fly 1259 LEYVHVSTGLTLDPERSYEYD---MRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILKV 1320
Fly 1321 SNASRTTKIVVIDDKKDADKEDDNDLDNGDE----VGRSKAKANDDDSSDDNDDDDATGVKLKQR 1381
Fly 1382 KTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGD--------------------- 1425
Fly 1426 -------DKAVERLLS-NDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQV 1482
Fly 1483 QHIKRAII----YKGTDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVI 1543
Fly 1544 VKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAG 1608
Fly 1609 FGRADELSSPSSRLMVGLPVRNGTGAFEL 1637 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI1 | NP_523743.1 | RNA_pol_rpoA1 | 14..1009 | CDD:274106 | 490/1033 (47%) |
RNAP_I_RPA1_N | 18..982 | CDD:259844 | 468/1004 (47%) | ||
RNA_pol_Rpb1_5 | 936..1593 | CDD:282807 | 281/712 (39%) | ||
HMG-box | 1057..1119 | CDD:294061 | 12/63 (19%) | ||
RNAP_I_Rpa1_C | 1166..1638 | CDD:132722 | 210/514 (41%) | ||
polr1a | XP_031751156.1 | RNAP_I_RPA1_N | 84..1075 | CDD:259844 | 468/1005 (47%) |
rpoC2_cyan | 961..>1306 | CDD:274104 | 174/347 (50%) | ||
RNAP_I_Rpa1_C | 1270..1780 | CDD:132722 | 210/514 (41%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 497 | 1.000 | Domainoid score | I361 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H7033 | |
Inparanoid | 1 | 1.050 | 1284 | 1.000 | Inparanoid score | I166 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D57214at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0005035 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | LDO | PTHR19376 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X3561 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 7.160 |