DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI1 and polr3a

DIOPT Version :9

Sequence 1:NP_523743.1 Gene:RpI1 / 36617 FlyBaseID:FBgn0019938 Length:1642 Species:Drosophila melanogaster
Sequence 2:NP_001096178.1 Gene:polr3a / 100124725 XenbaseID:XB-GENE-1012749 Length:1390 Species:Xenopus tropicalis


Alignment Length:1712 Identity:457/1712 - (26%)
Similarity:726/1712 - (42%) Gaps:429/1712 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RAMDVHMFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIP--GGLYDIRMGSYGRCMDPCG 67
            |..||....|.:.|.|.:.:::|:.:.:::::...:....:..|  .|:.|.|||:..:... |.
 Frog     6 RETDVAKKISHICFGVKSAEQMRQQAHIQIVSKSLYSQDNNHTPLAFGVLDHRMGTSEKDRH-CQ 69

  Fly    68 TCLK-LQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAG 131
            ||.| |.:|.||.|:::|..|.::..:.|.|..:|.:.|..|.::.:...|              
 Frog    70 TCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEE-------------- 120

  Fly   132 YIIEAQELELFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLRTAIT 196
               ..|.|:..|                    .|.:..:.|...|.:.:.....||.|....|..
 Frog   121 ---RKQFLDFLK--------------------RPGLTYLQKRGLKKKISDKCRKKTVCLYCGAYN 162

  Fly   197 HSALQRLGKKCRHCNKSMRFVRYMHRRLVFYVTL----------------------ADIKERVGT 239
            .|.     |||       ..::.:|.:   |.|.                      .:::..:|.
 Frog   163 GSV-----KKC-------GLLKIIHEK---YKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGR 212

  Fly   240 GAETGGQNKVIFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTP 304
            ..|  ..|.:|..:    .||||.|....|| |:.|..|           .|.|| .:..|.|.|
 Frog   213 AQE--NLNPLIVLN----LLRQIPAEDIPLL-LMNPEAG-----------KPSDL-ILTRLLVPP 258

  Fly   305 PRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEK 369
            ...|| ::|.|:..|..:.|:.:.:.|...:.:|:.|:...|       ||.           :.
 Frog   259 LCIRP-SVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITG-------AKT-----------QM 304

  Fly   370 LYTAWLALQMSVDVLLD-------VNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVI 427
            :...|..||:...:.::       :||:.: |...|..|.::.|.|..|.::.||||:::.||||
 Frog   305 IMEDWDFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 368

  Fly   428 TPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKN----GFTTY 488
            :||||:.:||:.:|...||.|::|..|.:.|:..:||:|.||||||||||:||.::    .|..|
 Frog   369 SPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKY 433

  Fly   489 IPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFR 553
                  ..||.:|:.|...     .||.||:::||::|.||||||||.|||.|.||: ...:|||
 Frog   434 ------GNREKIAQELRFG-----DIVERHLIDGDIVLFNRQPSLHKLSIMAHIARV-KPHRTFR 486

  Fly   554 LHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKL 618
            .:...|..|||||||||||.|.||:|.|:||||.|:...:|.:.|::|.||...|||.:.:...|
 Frog   487 FNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLL 551

  Fly   619 SIRGRFFNREDYQQLVFQGLSQLKKD----IKLLPPTILKPAVLWSGKQILSTIIINIIPEGYER 679
            :::..||:|....|::...|  :.||    ::|.||.||||..||:|||:.| :|:....:...|
 Frog   552 TLKDTFFDRAKACQIIASIL--VGKDEKIKVRLPPPAILKPVTLWTGKQVFS-LILQPSHDNPVR 613

  Fly   680 INLDSFAKIAGKNWNVSRPRPPICGTNPEGNDL--SESQVQIRNGELLVGVLDKQQYGA-TTYGL 741
            .||    :..||.:         ||   :|.||  ::|.|.|:|.||:.|.|||...|: :...:
 Frog   614 ANL----RTKGKQY---------CG---KGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNI 662

  Fly   742 IHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAV 806
            .:.:...:|...:...::...::...||...||::|:.|:                  ..|...:
 Frog   663 FYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDV------------------TPGQGLL 709

  Fly   807 AAALELEDE--PPHDELVEKMEAAYVK-------DSKFRVLLDRKYKSLLDGYTNDINSTCLPRG 862
            .|..:|.|.  ...||.:|.:....::       :.....|:.|:...:.|    ...|.||.. 
 Frog   710 KAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRD----HAGSACLRE- 769

  Fly   863 LITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGG 927
             :.|  ||:..:|.|.|:|||.:|..|:...:||..:.|.|.|.....:|||.|......|.:.|
 Frog   770 -LDK--SNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKG 831

  Fly   928 FIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSV 992
            |:...|.:|:.|.:||||.|||||||:||||||:.:||:||.|:|.||.|...||||||.|...:
 Frog   832 FVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDI 896

  Fly   993 VQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKK 1057
            :||:||.||||                         ||.::...:..:..:|..:.|.:... .:
 Frog   897 IQFIYGGDGLD-------------------------PAAMEGKDEPLEFKRVLENVKAVYPC-SE 935

  Fly  1058 KPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYARCPD 1122
            :||..:......||.:.::.|                                      :..|.|
 Frog   936 EPALSKNELILTSESIMKKTE--------------------------------------FLCCQD 962

  Fly  1123 PTVAVYKQDL--YYGSVSERTRKLITDYA----------------KRKPALKETIADIMRVKTIK 1169
            .    |.|::  :...||||.:|....|.                :..|...|...:..|.|.::
 Frog   963 S----YLQEIKKFVTGVSERIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMR 1023

  Fly  1170 SLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIP 1234
            :...||..||.:.|||||||.|||||.||||||...||:|||:||::||:. ||.||.||.    
 Frog  1024 AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKNISTPI---- 1083

  Fly  1235 IKPGQQHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPK 1299
                                         ::..|.:|.:..:.     :.:...:.|...|    
 Frog  1084 -----------------------------ITAHLDIDDDADFA-----RLVKGRIEKTLLG---- 1110

  Fly  1300 HIIKYMHQTFFKQLIRAILKVS-NASRTTKIVVIDDKKDADKEDDNDLDNGDEVGRSKAKANDDD 1363
            .|.:|:.:.|.......::|:| ...|..::.|                |.:.|..|...:    
 Frog  1111 EISEYIEEVFLPDDCFLLVKLSLERIRLLRLEV----------------NAETVRYSICMS---- 1155

  Fly  1364 SSDDNDDDDATGVKLKQRKTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGDDKA 1428
                         ||:.:         |.|:                                  
 Frog  1156 -------------KLRVK---------PGDI---------------------------------- 1164

  Fly  1429 VERLLSNDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIY-- 1491
               .:..:.|...| .:||.       ..|:.|    :...::|...|.||..:..:.||:|:  
 Frog  1165 ---AVHGEAVLCVT-PRENS-------KSSMYY----VLQSLKEDLPKVVVQGIPEVARAVIHID 1214

  Fly  1492 --KGTDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1554
              .|.:..:|| .:|.|:..:...:.:.. :|..||:.:.:.:|.|||||...|:.|:......:
 Frog  1215 EQSGKEKYKLL-VEGDNLRSVMATHGVKG-SRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNH 1277

  Fly  1555 GITVDRRHLSLIADYMTFDGTFQPLSRKGM-EHSSSPLQQMSFESSLQFLKSAAGFGRADELSSP 1618
            |:::||||:.|:||.||:.|....::|.|: :...|.|...|||.:...|..||.||:.|.:...
 Frog  1278 GMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGV 1342

  Fly  1619 SSRLMVGLPVRNGTGAFELLTK 1640
            |..:::|:|:..|||.|:||.|
 Frog  1343 SECIIMGIPMNIGTGLFKLLHK 1364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI1NP_523743.1 RNA_pol_rpoA1 14..1009 CDD:274106 313/1046 (30%)
RNAP_I_RPA1_N 18..982 CDD:259844 297/1015 (29%)
RNA_pol_Rpb1_5 936..1593 CDD:282807 165/680 (24%)
HMG-box 1057..1119 CDD:294061 5/61 (8%)
RNAP_I_Rpa1_C 1166..1638 CDD:132722 116/477 (24%)
polr3aNP_001096178.1 RNAP_III_RPC1_N 23..890 CDD:259847 299/1015 (29%)
RNAP_III_Rpc1_C 1020..1359 CDD:132723 115/474 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D591636at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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