Sequence 1: | NP_523743.1 | Gene: | RpI1 / 36617 | FlyBaseID: | FBgn0019938 | Length: | 1642 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001096178.1 | Gene: | polr3a / 100124725 | XenbaseID: | XB-GENE-1012749 | Length: | 1390 | Species: | Xenopus tropicalis |
Alignment Length: | 1712 | Identity: | 457/1712 - (26%) |
---|---|---|---|
Similarity: | 726/1712 - (42%) | Gaps: | 429/1712 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 RAMDVHMFPSDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIP--GGLYDIRMGSYGRCMDPCG 67
Fly 68 TCLK-LQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAG 131
Fly 132 YIIEAQELELFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLRTAIT 196
Fly 197 HSALQRLGKKCRHCNKSMRFVRYMHRRLVFYVTL----------------------ADIKERVGT 239
Fly 240 GAETGGQNKVIFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTP 304
Fly 305 PRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEK 369
Fly 370 LYTAWLALQMSVDVLLD-------VNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVI 427
Fly 428 TPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKN----GFTTY 488
Fly 489 IPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFR 553
Fly 554 LHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKL 618
Fly 619 SIRGRFFNREDYQQLVFQGLSQLKKD----IKLLPPTILKPAVLWSGKQILSTIIINIIPEGYER 679
Fly 680 INLDSFAKIAGKNWNVSRPRPPICGTNPEGNDL--SESQVQIRNGELLVGVLDKQQYGA-TTYGL 741
Fly 742 IHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAV 806
Fly 807 AAALELEDE--PPHDELVEKMEAAYVK-------DSKFRVLLDRKYKSLLDGYTNDINSTCLPRG 862
Fly 863 LITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGG 927
Fly 928 FIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSV 992
Fly 993 VQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKK 1057
Fly 1058 KPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKLWKKADAEDKALYRKKYARCPD 1122
Fly 1123 PTVAVYKQDL--YYGSVSERTRKLITDYA----------------KRKPALKETIADIMRVKTIK 1169
Fly 1170 SLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIP 1234
Fly 1235 IKPGQQHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERSYEYDMRFQFLPREVYKEDYGVRPK 1299
Fly 1300 HIIKYMHQTFFKQLIRAILKVS-NASRTTKIVVIDDKKDADKEDDNDLDNGDEVGRSKAKANDDD 1363
Fly 1364 SSDDNDDDDATGVKLKQRKTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGDDKA 1428
Fly 1429 VERLLSNDMVKAYTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIY-- 1491
Fly 1492 --KGTDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVY 1554
Fly 1555 GITVDRRHLSLIADYMTFDGTFQPLSRKGM-EHSSSPLQQMSFESSLQFLKSAAGFGRADELSSP 1618
Fly 1619 SSRLMVGLPVRNGTGAFELLTK 1640 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpI1 | NP_523743.1 | RNA_pol_rpoA1 | 14..1009 | CDD:274106 | 313/1046 (30%) |
RNAP_I_RPA1_N | 18..982 | CDD:259844 | 297/1015 (29%) | ||
RNA_pol_Rpb1_5 | 936..1593 | CDD:282807 | 165/680 (24%) | ||
HMG-box | 1057..1119 | CDD:294061 | 5/61 (8%) | ||
RNAP_I_Rpa1_C | 1166..1638 | CDD:132722 | 116/477 (24%) | ||
polr3a | NP_001096178.1 | RNAP_III_RPC1_N | 23..890 | CDD:259847 | 299/1015 (29%) |
RNAP_III_Rpc1_C | 1020..1359 | CDD:132723 | 115/474 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D591636at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |