| Sequence 1: | NP_001260974.1 | Gene: | LamC / 36615 | FlyBaseID: | FBgn0010397 | Length: | 640 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_113971.1 | Gene: | Nefl / 83613 | RGDID: | 621458 | Length: | 542 | Species: | Rattus norvegicus |
| Alignment Length: | 552 | Identity: | 150/552 - (27%) |
|---|---|---|---|
| Similarity: | 244/552 - (44%) | Gaps: | 92/552 - (16%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 2 SARRVTLNTRVSRASTSTPVGGA-----STSSRVGATSP-------------TSPTRTSRQQEKE 48
Fly 49 ELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKE 113
Fly 114 KAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAK 178
Fly 179 ELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISE 243
Fly 244 IDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVR 308
Fly 309 LMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQE 373
Fly 374 YQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSG 438
Fly 439 RRSATPGISG-------SSAVKRRRTVIDESEDRTLSEYSVN-AAAKGDLEIIEADVEGRFIKLH 495
Fly 496 NKGTEEINLTGWQLTRIAGDEELAFKFSRGSK 527 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| LamC | NP_001260974.1 | Filament | 45..401 | CDD:278467 | 104/355 (29%) |
| ATP-synt_B | <67..>142 | CDD:304375 | 19/74 (26%) | ||
| MreC | <178..>224 | CDD:302802 | 16/45 (36%) | ||
| LTD | 473..574 | CDD:279300 | 13/56 (23%) | ||
| Nefl | NP_113971.1 | Head | 2..93 | 16/64 (25%) | |
| Filament_head | 9..88 | CDD:282575 | 12/59 (20%) | ||
| Filament | 89..400 | CDD:278467 | 104/355 (29%) | ||
| Coil 1A | 94..125 | 16/31 (52%) | |||
| Linker 1 | 126..138 | 2/11 (18%) | |||
| Coil 1B | 139..234 | 32/136 (24%) | |||
| GBP_C | <140..239 | CDD:303769 | 33/142 (23%) | ||
| coiled coil | 212..222 | CDD:293879 | 3/9 (33%) | ||
| Linker 12 | 235..253 | 3/19 (16%) | |||
| Coil 2A | 254..272 | 6/17 (35%) | |||
| Linker 2 | 273..281 | 2/7 (29%) | |||
| Coil 2B | 282..397 | 35/114 (31%) | |||
| Epitope, recognized by IF-specific monoclonal antibody | 382..392 | 7/9 (78%) | |||
| Tail | 398..542 | 34/137 (25%) | |||
| Tail, subdomain A | 398..444 | 16/55 (29%) | |||
| Tail, subdomain B (acidic) | 445..542 | 18/80 (23%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 451..542 | 16/74 (22%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.910 | |||||