| Sequence 1: | NP_001260974.1 | Gene: | LamC / 36615 | FlyBaseID: | FBgn0010397 | Length: | 640 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_112402.1 | Gene: | Vim / 81818 | RGDID: | 621646 | Length: | 466 | Species: | Rattus norvegicus |
| Alignment Length: | 472 | Identity: | 138/472 - (29%) |
|---|---|---|---|
| Similarity: | 228/472 - (48%) | Gaps: | 91/472 - (19%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 6 VTLNTR-----------VSRASTSTPVGGA----STSSRVGATSP-----------------TSP 38
Fly 39 TRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAA 103
Fly 104 RKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLA 168
Fly 169 DRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTET 233
Fly 234 RSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQ 298
Fly 299 GSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRM 363
Fly 364 RDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPG------RPTTDSGISSNGSH 422
Fly 423 -----LTASASSRSGRV 434 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| LamC | NP_001260974.1 | Filament | 45..401 | CDD:278467 | 115/355 (32%) |
| ATP-synt_B | <67..>142 | CDD:304375 | 19/74 (26%) | ||
| MreC | <178..>224 | CDD:302802 | 16/45 (36%) | ||
| LTD | 473..574 | CDD:279300 | |||
| Vim | NP_112402.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..33 | 1/1 (100%) | |
| Head | 2..95 | 13/63 (21%) | |||
| Filament_head | 14..101 | CDD:282575 | 13/69 (19%) | ||
| Coil 1A | 96..131 | 18/34 (53%) | |||
| Filament | 102..410 | CDD:278467 | 115/355 (32%) | ||
| Linker 1 | 132..153 | 6/23 (26%) | |||
| DUF4559 | <153..257 | CDD:291771 | 35/145 (24%) | ||
| Coil 1B | 154..245 | 32/132 (24%) | |||
| Linker 12 | 246..268 | 5/24 (21%) | |||
| Coil 2 | 269..407 | 49/137 (36%) | |||
| [IL]-x-C-x-x-[DE] motif. /evidence=ECO:0000250|UniProtKB:P08670 | 326..329 | 1/2 (50%) | |||
| Tail | 408..466 | 10/47 (21%) | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG0977 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 3 | 2.810 | |||||