DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment LamC and Lmntd1

DIOPT Version :9

Sequence 1:	NP_001260974.1	Gene:	LamC / 36615	FlyBaseID:	FBgn0010397	Length:	640	Species:	Drosophila melanogaster
Sequence 2:	XP_006507048.1	Gene:	Lmntd1 / 74071	MGIID:	1921321	Length:	438	Species:	Mus musculus

Alignment Length:	191	Identity:	40/191 - (20%)
Similarity:	78/191 - (40%)	Gaps:	48/191 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly   414 SGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSAVKRRR--------------------TV 458
            |.:||.|     ..:|:|..::.|.:.|:....|.||.|.||:                    ::
Mouse   108 STLSSRG-----QLASKSTILSCSHKDSSLGKQSTSSMVPRRQPQSSSDVDTYTFGNGEDYFLSL 167

  Fly   459 IDESEDRT--------LSEY---------SVNAAAKGDLEIIEADVEGRFIKLHNKGTE-EINLT 505
            ..||:..|        :||:         ...:::.|:::|.|.:::|.|::|.|...| |:.:.
Mouse   168 FGESKKLTAHTPQAENVSEHLSVILEEVGQFTSSSLGEIKIAEVNIKGLFVRLVNSSNEKEVEIG 232

  Fly   506 GWQLTR-IAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNNLVMKKKWPVANSMRS 565
            ...|.: :.|.....::|.....:...::||:|:..:.....||.:.|    |...:..||
Mouse   233 NHILQQNVNGHAVSLYQFPDNITLQANSTVTVWAAASEAKPQPPTDFV----WEEQSKFRS 289

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
LamC	NP_001260974.1	Filament	45..401	CDD:278467
		ATP-synt_B	<67..>142	CDD:304375
		MreC	<178..>224	CDD:302802
		LTD	473..574	CDD:279300	21/95 (22%)
Lmntd1	XP_006507048.1	LTD	204..309	CDD:376421	21/90 (23%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0977
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810