DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt87

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001095145.1 Gene:Krt87 / 681126 RGDID:1583565 Length:495 Species:Rattus norvegicus


Alignment Length:458 Identity:114/458 - (24%)
Similarity:195/458 - (42%) Gaps:104/458 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GATSPTSPTRTS----------------------RQQEKEELQHLNDRLACYIDRMRNLENENSR 73
            |...|:.|..|:                      :.:|||:::.||.|.|.:||::|.||.:|..
  Rat    74 GVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRFLEQQNKL 138

  Fly    74 LTQELNLAQDTVNRE--TSNLKAVYEKELAAARKLLDETAKEKAK-LEIDIKRLWEENDDLKPRL 135
            |..:....|   ||:  .|||:.::|..:        ||.:.:|: :|.|..||..|.:.::..:
  Rat   139 LETKWQFYQ---NRKCCESNLEPLFEGYI--------ETLRREAEYVEADSGRLAAELNHVQEAM 192

  Fly   136 DKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELAL----ENERLRRQLDDLRK 196
            :.              |:.||.|                    |:||    |||.:.     |:|
  Rat   193 EG--------------YKKRYEE--------------------EVALRATAENEFVA-----LKK 218

  Fly   197 QLEAETLARVDLENQNQSLREELAFKDQVHTQELTETR-SRRQIEISEIDGRLSRQYEAKLQQSL 260
            .::...|.:.|||...::|.:|:.|..:::.:   ||| ....|..:.:..::....:..:...:
  Rat   219 DVDCAYLRKSDLEANAEALTQEIDFLRRLYEE---ETRLLHAHISDTSVIVKMDNSRDLNMDCVV 280

  Fly   261 QELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLE 325
            .|::.||:.....:|.|.|..|..:.:.:||...|..:......||:..:...|..|.|:::|.:
  Rat   281 AEIKAQYDDIASRSRAEAESWYRTKCEEMKATVIRHGETLRRTREEMNELNRIIQRLTAEIENAK 345

  Fly   326 DTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAA 390
            ...|.|...:.|.|...:.........:..|||.||:.:.:||..|:|||.:|:.|:.||:|||.
  Rat   346 CQRAKLETAVAEAEQQGEAALTDARGKLTELEAALQKAKQDMACLLKEYQEVMNSKLGLDIEIAT 410

  Fly   391 YDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASASSRSG--------RVTPSGRRSATPGIS 447
            |.:||.|||.||          ..|:   ||.....:|||.|        ..||..:.::.|.::
  Rat   411 YRRLLEGEEHRL----------CEGV---GSVNVCVSSSRGGVTCGGLTYGTTPGRQIASGPSVT 462

  Fly   448 GSS 450
            |.|
  Rat   463 GGS 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 96/363 (26%)
PRK13922 154..>221 CDD:473155 17/70 (24%)
LTD 474..574 CDD:460003
Krt87NP_001095145.1 Keratin_2_head <45..107 CDD:465068 4/32 (13%)
Filament 110..421 CDD:459643 96/363 (26%)
Blue background indicates that the domain is not in the aligned region.

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