Sequence 1: | NP_001260974.1 | Gene: | LamC / 36615 | FlyBaseID: | FBgn0010397 | Length: | 640 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001002016.2 | Gene: | Lmna / 60374 | RGDID: | 620456 | Length: | 665 | Species: | Rattus norvegicus |
Alignment Length: | 626 | Identity: | 221/626 - (35%) |
---|---|---|---|
Similarity: | 335/626 - (53%) | Gaps: | 80/626 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 LNTRVSRASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENS 72
Fly 73 RLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDK 137
Fly 138 KTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAET 202
Fly 203 LARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQY 267
Fly 268 EGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLN 332
Fly 333 ARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCG 397
Fly 398 EERRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDES 462
Fly 463 EDRTLSEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEEL-AFKFSRGS 526
Fly 527 KVLGGASVTIWSVDAGTAHDPPNNLVMKKK--WPVANSMRSVLANADKE-------VRVLSI--- 579
Fly 580 ----------------------------YN------TCGTC 586 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LamC | NP_001260974.1 | Filament | 45..401 | CDD:278467 | 143/355 (40%) |
ATP-synt_B | <67..>142 | CDD:304375 | 32/74 (43%) | ||
MreC | <178..>224 | CDD:302802 | 19/45 (42%) | ||
LTD | 473..574 | CDD:279300 | 38/110 (35%) | ||
Lmna | NP_001002016.2 | Interaction with MLIP. /evidence=ECO:0000250 | 1..130 | 62/136 (46%) | |
Head | 1..33 | 15/39 (38%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..27 | 12/33 (36%) | |||
Filament | 30..386 | CDD:365827 | 143/355 (40%) | ||
Coil 1A | 34..70 | 18/35 (51%) | |||
Linker 1 | 71..80 | 4/8 (50%) | |||
Coil 1B | 81..218 | 47/136 (35%) | |||
Linker 2 | 219..242 | 6/22 (27%) | |||
Coil 2 | 243..383 | 56/139 (40%) | |||
Tail | 384..665 | 66/235 (28%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 384..442 | 21/82 (26%) | |||
Nuclear localization signal. /evidence=ECO:0000255 | 417..422 | 2/6 (33%) | |||
LTD | 434..541 | CDD:395746 | 38/106 (36%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 552..577 | 0/24 (0%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 270 | 1.000 | Domainoid score | I1753 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0977 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 392 | 1.000 | Inparanoid score | I1917 |
OMA | 1 | 1.010 | - | - | QHG48052 | |
OrthoDB | 1 | 1.010 | - | - | D204815at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001052 | |
OrthoInspector | 1 | 1.000 | - | - | mtm9150 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103212 | |
Panther | 1 | 1.100 | - | - | O | PTHR45721 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X632 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.840 |