DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and krt78.7

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001006716.1 Gene:krt78.7 / 448361 XenbaseID:XB-GENE-876590 Length:631 Species:Xenopus tropicalis


Alignment Length:457 Identity:111/457 - (24%)
Similarity:210/457 - (45%) Gaps:80/457 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVTLNTRVSRASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLE 68
            ::||:||::.:....|             ..|.  .:..:.:|:|:::.||::.|.|||::|.||
 Frog   165 QQVTINTQLLQPLNLT-------------IDPN--VQKVKTEEREQIKTLNNKFAAYIDKVRFLE 214

  Fly    69 NENSRLTQELNLAQDTVNR---ETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDD 130
            .:|..|..:..|.|:...:   :.::|:.::||.:...|:.||....|||:|..::|.|.:..::
 Frog   215 QQNKVLETKWKLLQEQGTKGSTKRASLEPLFEKYIGDLRRYLDTLTNEKARLLQELKNLQDLVEE 279

  Fly   131 LKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLD--D 193
            .|                                      ||:||:.      |:|.:.:.|  .
 Frog   280 YK--------------------------------------KKYEDEI------NKRTKAENDFVV 300

  Fly   194 LRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQ 258
            |:|.::|..:.:.:||.:..::..|:.|...:...||::...  .:..:.:...:....:..|:.
 Frog   301 LKKDVDAAYMIKTELEAKVDAVTSEINFLRTLFAAELSQVHD--SVTDTSVVLTMDNNRDFNLEG 363

  Fly   259 SLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQN 323
            .:|:::.|.|...:.::.|.|.||||:.:.|:..|.........:..|:..:..:|..|.|:::|
 Frog   364 IIQDVKAQLELAAQRSKMEAEALYDNKYKELQRTAEGHGDSIKNSKTEIAELNRRIQRLRAEIEN 428

  Fly   324 LEDTNAGLNARIRELEN-----LLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVS 383
            ::...||||..|...|.     |.|.|::     :..|||..::::::||.||:|||.|:..|:|
 Frog   429 IKKQIAGLNQSIAGAEEKGNLALKDAEKK-----LQDLEAAEKKLKEDMARQLKEYQELLAAKIS 488

  Fly   384 LDLEIAAYDKLLCGEERRLNIESPGRPTTD--SGISSNGSHLTASASSRSGRVTPSGRRSATPGI 446
            ||:||:.|..:|.|||.|::.|.....:..  ||.||..|.|..:|....|.:  .|......|:
 Frog   489 LDVEISTYGLMLGGEEGRMSGEIANNVSISVISGGSSVYSALGGAAGGMGGGM--GGGMGGGMGM 551

  Fly   447 SG 448
            .|
 Frog   552 GG 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 92/365 (25%)
ATP-synt_B <67..>142 CDD:304375 19/77 (25%)
MreC <178..>224 CDD:302802 10/47 (21%)
LTD 473..574 CDD:279300
krt78.7NP_001006716.1 Keratin_2_head <156..188 CDD:374433 6/37 (16%)
Filament 191..506 CDD:365827 92/365 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D204815at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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