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Protein Alignment LamC and nif

DIOPT Version :9

Sequence 1:	NP_001260974.1	Gene:	LamC / 36615	FlyBaseID:	FBgn0010397	Length:	640	Species:	Drosophila melanogaster
Sequence 2:	NP_001006106.1	Gene:	nif / 448000	XenbaseID:	XB-GENE-876557	Length:	468	Species:	Xenopus tropicalis

Alignment Length:	450	Identity:	127/450 - (28%)
Similarity:	209/450 - (46%)	Gaps:	59/450 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    32 ATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVY 96
            :|:.::..:..|..|||:||.||||...||:::..||.:|..|..|:.|.:.. :.|.|.|..:|
Frog    70 STALSNELKIVRTNEKEQLQGLNDRFVTYIEKVHQLEQQNKLLEAEVTLLRQK-HSEPSRLSQIY 133

  Fly    97 EKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNG 161
            |:|:...|..|:|..:||.:.|:|.:.|......||.:|::::.....||:..:.|
Frog   134 EQEIRELRSRLEEQEQEKDQAELDYEHLGTCLQQLKMKLEQESGRREEAEDTLKNY--------- 189

  Fly   162 KYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVH 226
                                             ||.|:..||.|:.||.:.:||.:|:||..:||
Frog   190 ---------------------------------RKDLDQATLNRLQLEKKVESLLDEIAFLRKVH 221

  Fly   227 TQELTETRSRRQIEISEIDGRLSRQYEAK--LQQSLQELRDQYEGQMRINREEIELLYDNEIQNL 289
            .:|:.|.    |..:.|....:.....:|  |..:|:|:|.|||.....|::..|..|..:|.|:
Frog   222 EEEIAEL----QASVQEAQTSVEMDVVSKPDLTAALKEIRMQYEVLSARNQQSSEEWYQAKIANV 282

  Fly   290 KAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIA 354
            ...|:|.......|.||:...|.::.....::..|...|..|..:::|.|:..:.|.......|.
Frog   283 SLEASRNNDSVRQAKEEISEYRRQLQARTLEIDALRSANESLERQLQESEDRNNEEISHLQDTIG 347

  Fly   355 SLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGIS-- 417
            .|:..|:..::|||..|:|||.|:::|::||:|||||.|||.|||.||.....|   :..||.
Frog   348 QLDNALRTTKEEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRLTSVGGG---SMFGIGYP 409

  Fly   418 -SNGSHLTASASSRSGRVT---PSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEYSVN 473
             |:||: :...||.|..:|   ...:.|...|..|||...:.....:..:::|..:.:.|
Frog   410 FSSGSY-SGGRSSTSSTITIRKEEKKESTEGGKGGSSGQPKTSKPGEPVQEKTPQKAAAN 468

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.