DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and krt97

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001002383.1 Gene:krt97 / 436656 ZFINID:ZDB-GENE-040718-78 Length:438 Species:Danio rerio


Alignment Length:488 Identity:125/488 - (25%)
Similarity:215/488 - (44%) Gaps:109/488 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NTRVSRASTSTPVGGASTSSRV-GATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENS 72
            :.|||.|.:|.  ||...||.: |..:.....    ..||..:|:||||||.|::::|:||..|:
Zfish    47 SVRVSYAQSSR--GGFDMSSALAGGDNGFGMV----VNEKTTMQNLNDRLASYLEKVRSLEKANA 105

  Fly    73 RLTQELNLAQD---TVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPR 134
            .|.:::....|   .|:|:.|:    |...:...||.:...:::.|::.:.|             
Zfish   106 ELERQIREWYDKRTPVSRDYSH----YYVTIEDLRKKISVASQDNARIILQI------------- 153

  Fly   135 LDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLD--DLRKQ 197
                        :||:|....:             |.|:|:   ||||   ||..:.|  .|||.
Zfish   154 ------------DNAKLAAEDF-------------RVKYEN---ELAL---RLSVEADIAGLRKV 187

  Fly   198 LEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQE 262
            |:..|:.|.|||.|.:.|:|||.:..:.|.:||...|:  |:..|.::..:....:..|.:.::|
Zfish   188 LDDLTMTRSDLEMQIEGLKEELVYLKKNHAEELAALRA--QMTSSSVNVEVDAAPQQDLARIMEE 250

  Fly   263 LRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDT 327
            :|.||||....|:.|:|..|..:...|....:...:..:::..|:..:|..:..|..:||:....
Zfish   251 MRQQYEGITEKNKREMEAWYKGKFDELNKQVSTRQEDLSMSRNEINELRRTLQALEIELQSQLSL 315

  Fly   328 NAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYD 392
            .:.|...:.|.|:....:..:....|.|||.||.:||.::..|..||:.|:|||..|::|||.|.
Zfish   316 KSALEGTLGETESRYSIQLNQLQAVINSLEQELTQMRMDIERQASEYKLLLDIKTRLEMEIAEYR 380

  Fly   393 KLLCGEE------RRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSA 451
            :||.||:      :.:.:.:|.:|                                .|.::    
Zfish   381 RLLDGEDIQRQTIKVVEVVAPPKP--------------------------------DPVVT---- 409

  Fly   452 VKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIE 484
             ||.||||:|..|..:    |:.....|:|:::
Zfish   410 -KRVRTVIEEVVDGKV----VSRTEDVDVEVMK 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 101/366 (28%)
PRK13922 154..>221 CDD:473155 24/68 (35%)
LTD 474..574 CDD:460003 2/11 (18%)
krt97NP_001002383.1 Filament 78..387 CDD:459643 100/358 (28%)

Return to query results.
Submit another query.