DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and krt97

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001002383.1 Gene:krt97 / 436656 ZFINID:ZDB-GENE-040718-78 Length:438 Species:Danio rerio


Alignment Length:488 Identity:125/488 - (25%)
Similarity:215/488 - (44%) Gaps:109/488 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NTRVSRASTSTPVGGASTSSRV-GATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENS 72
            :.|||.|.:|.  ||...||.: |..:.....    ..||..:|:||||||.|::::|:||..|:
Zfish    47 SVRVSYAQSSR--GGFDMSSALAGGDNGFGMV----VNEKTTMQNLNDRLASYLEKVRSLEKANA 105

  Fly    73 RLTQELNLAQD---TVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPR 134
            .|.:::....|   .|:|:.|:    |...:...||.:...:::.|::.:.|             
Zfish   106 ELERQIREWYDKRTPVSRDYSH----YYVTIEDLRKKISVASQDNARIILQI------------- 153

  Fly   135 LDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLD--DLRKQ 197
                        :||:|....:             |.|:|:   ||||   ||..:.|  .|||.
Zfish   154 ------------DNAKLAAEDF-------------RVKYEN---ELAL---RLSVEADIAGLRKV 187

  Fly   198 LEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQE 262
            |:..|:.|.|||.|.:.|:|||.:..:.|.:||...|:  |:..|.::..:....:..|.:.::|
Zfish   188 LDDLTMTRSDLEMQIEGLKEELVYLKKNHAEELAALRA--QMTSSSVNVEVDAAPQQDLARIMEE 250

  Fly   263 LRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDT 327
            :|.||||....|:.|:|..|..:...|....:...:..:::..|:..:|..:..|..:||:....
Zfish   251 MRQQYEGITEKNKREMEAWYKGKFDELNKQVSTRQEDLSMSRNEINELRRTLQALEIELQSQLSL 315

  Fly   328 NAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYD 392
            .:.|...:.|.|:....:..:....|.|||.||.:||.::..|..||:.|:|||..|::|||.|.
Zfish   316 KSALEGTLGETESRYSIQLNQLQAVINSLEQELTQMRMDIERQASEYKLLLDIKTRLEMEIAEYR 380

  Fly   393 KLLCGEE------RRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSA 451
            :||.||:      :.:.:.:|.:|                                .|.::    
Zfish   381 RLLDGEDIQRQTIKVVEVVAPPKP--------------------------------DPVVT---- 409

  Fly   452 VKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIE 484
             ||.||||:|..|..:    |:.....|:|:::
Zfish   410 -KRVRTVIEEVVDGKV----VSRTEDVDVEVMK 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 101/366 (28%)
ATP-synt_B <67..>142 CDD:304375 13/77 (17%)
MreC <178..>224 CDD:302802 21/47 (45%)
LTD 473..574 CDD:279300 2/12 (17%)
krt97NP_001002383.1 Filament 78..387 CDD:278467 100/358 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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