DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and prph

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001001235.1 Gene:prph / 407916 XenbaseID:XB-GENE-493857 Length:456 Species:Xenopus tropicalis


Alignment Length:475 Identity:132/475 - (27%)
Similarity:229/475 - (48%) Gaps:93/475 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SRASTSTPVGGAS--TSSRVGATS----PTSPTR-------------------TSRQQEKEELQH 52
            ||.|||...|..|  .|||..:::    .::|.|                   |:|..||.|||.
 Frog    31 SRLSTSRHFGSPSPGPSSRSSSSAFRVRSSTPVRVSLDRVDFSVAEAVNQEFLTTRSNEKAELQE 95

  Fly    53 LNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKL 117
            ||||.|.:|:::|.||.:|:.|..|:|.|:   ::|.:....:.::||...|:.|:...|::.::
 Frog    96 LNDRFASFIEKVRYLEQQNAVLVTEINQAR---SKEPTRASDLCQQELRELRRQLELLGKDRDRI 157

  Fly   118 EIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELAL 182
            :::...|.|:...||.|||::..:...||||..|:                              
 Frog   158 QVERDNLAEDLAFLKQRLDEEVHKREDAENNLVLF------------------------------ 192

  Fly   183 ENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGR 247
                        ||.::..||:|::||.:.:||.:|:.|..::|.:||.:.:...|.:...::..
 Frog   193 ------------RKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELNDVQVTVQAQPIHMEIE 245

  Fly   248 LSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRT 312
            .::|.:  |..:|:::|.|||.....|.:|.|..|.::..:|..||.|.::....|.:::...|.
 Frog   246 AAKQPD--LTSALRDIRSQYETIAAKNLQESEEWYKSKFADLSDAATRNSEALRQAKQDMNESRR 308

  Fly   313 KIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGL 377
            :|..|..::..|:.||..|..:::::|.....|...:...|..||.|:|.|::||:..|:|||.|
 Frog   309 QIQSLTCEIDGLKGTNEALLRQMKDMEEQFGVEASNYQDTIGRLEQEVQHMKEEMSRHLREYQDL 373

  Fly   378 MDIKVSLDLEIAAYDKLLCGEERR----------LNIESPGRPTTDSGISSNGSH-----LTASA 427
            :::|::||:|||.|.|||.|||.|          |:|:||. |..|   .|..:|     :..:.
 Frog   374 LNVKMALDIEIATYRKLLEGEESRIAVPIHSLTSLSIKSPA-PEVD---RSTEAHTRKTVVIKTI 434

  Fly   428 SSRSGR--VTPSGRRSATPG 445
            .:|.|.  ||.|.:..::.|
 Frog   435 ETRDGEQVVTESRKEQSSEG 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 103/355 (29%)
ATP-synt_B <67..>142 CDD:304375 20/74 (27%)
MreC <178..>224 CDD:302802 11/45 (24%)
LTD 473..574 CDD:279300
prphNP_001001235.1 Filament_head 10..87 CDD:368088 13/55 (24%)
Filament 88..397 CDD:365827 103/355 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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