DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and Krt72

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001008809.2 Gene:Krt72 / 406227 RGDID:1303216 Length:520 Species:Rattus norvegicus


Alignment Length:474 Identity:117/474 - (24%)
Similarity:207/474 - (43%) Gaps:88/474 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASTSTPVGGAST---SSRVGATSPT-----------------SPTRTS--------RQQEKEELQ 51
            ||...|.|...|   |:.:|.|.|:                 :|....        |.||:|:::
  Rat    75 ASGGRPGGFVGTVFGSAGLGPTCPSVCPPGGIPQVVVNKSLLAPLNVELDPEIQKVRAQEREQIK 139

  Fly    52 HLNDRLACYIDRMRNLENENSRLTQELNLAQD-TVNRETSNLKAVYEKELAAARKLLDETAKEKA 115
            .||::.|.:||::|.||.:|..|..:..|.|. ..|....:|:.|:|..::..:|.|:..:.::.
  Rat   140 ALNNKFASFIDKVRFLEQQNQVLETKWELLQQLDQNNSRRSLEPVHESYISNLQKQLEILSGDRV 204

  Fly   116 KLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKEL 180
            :|:.:::.:.|..:|.|.|.:.:....|.|||                               |.
  Rat   205 RLDSELRNMREVVEDCKKRYEVEINRRTAAEN-------------------------------EF 238

  Fly   181 ALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEID 245
            .:           |:|.::|..:.:|:|:.:..|:.:::.|...:...|:.:.:|    .||:..
  Rat   239 VV-----------LKKDVDAAYMNKVELQAKVDSMTDDIKFFKVLFEGEIAQMQS----HISDTS 288

  Fly   246 GRLS----RQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEE 306
            ..||    ||.:  |...|.|:|.|||.....::.|.|.:|..:||.|:|.|.:......|...|
  Rat   289 VILSMDNNRQLD--LDSILAEVRAQYEEIAVKSKAETENMYQCKIQELQATAGQHGDDLKLTKSE 351

  Fly   307 VRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQL 371
            :..:...|..:::::.|::...:.|...|.:.|...|...:.....:..||..||:.::|:|..|
  Rat   352 ITEINRLIQRIHSEIGNMKKQCSNLETAIADAEQRGDCALKDARAKLDQLEGVLQQSKEELARML 416

  Fly   372 QEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGR------PTTDSGISSNGSHLTASASSR 430
            :|:|.||::|::||:|||.|.|||..||.|:..|.|..      .:|::|....|..:...||| 
  Rat   417 REHQELMNVKLALDMEIATYRKLLESEESRMAGEYPSSVSISVVSSTNAGPGGAGFSVGFGASS- 480

  Fly   431 SGRVTPSGRRSATPGISGS 449
            :....|......|.|..||
  Rat   481 NYNYRPLALEVKTKGSCGS 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 92/360 (26%)
PRK13922 154..>221 CDD:473155 7/66 (11%)
LTD 474..574 CDD:460003
Krt72NP_001008809.2 Head 1..133 11/57 (19%)
Keratin_2_head 15..130 CDD:465068 10/54 (19%)
Filament 133..446 CDD:459643 92/360 (26%)
Coil 1A 134..169 12/34 (35%)
Linker 1 170..188 5/17 (29%)
Coil 1B 189..280 20/132 (15%)
Linker 12 281..304 8/28 (29%)
Coil 2 305..443 43/137 (31%)
Tail 444..520 15/57 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 495..520 3/5 (60%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.