DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and Gm5414

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001003670.1 Gene:Gm5414 / 406223 MGIID:3646939 Length:552 Species:Mus musculus


Alignment Length:470 Identity:118/470 - (25%)
Similarity:196/470 - (41%) Gaps:95/470 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PVGG-----ASTSSRVGATSPTSPT-RTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQEL 78
            |.||     .|.|..:.......|| :..|.:|:|:::.||:|.|.:||:::.||.:|..|..:.
Mouse   120 PSGGIQEVTISQSLLIPLNLQIDPTIQRVRTEEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKW 184

  Fly    79 NLAQD----TVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKT 139
            .|.|:    ||..|...|   :|..:....:.|..|..||..|:.:::|                
Mouse   185 ALLQEQGTKTVKPEVETL---FEDYINILSRRLGFTVAEKGHLDAELRR---------------- 230

  Fly   140 KEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQ-AKELALENERLRRQLDDLRKQLEAETL 203
                   :...|.:.:|               |:||: :|..|.|||.|     .|:|..:|..:
Mouse   231 -------SQGVLEDYKY---------------KYEDEISKRTAAENEFL-----TLKKDADAAFM 268

  Fly   204 ARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLS--RQYEAKLQQSLQELRDQ 266
            ...:|..:..||.:|:.|...:...|:    |:.|..:|:....:|  ..:...::..:.|::.|
Mouse   269 IENELTAKVHSLIDEINFLRTLFDAEM----SQMQTPLSDTSVIISMDNNHSLDMESIIAEVKTQ 329

  Fly   267 YEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGL 331
            ||...:.::.|.|..|..:.:.|:..|.|.........:|:..:...|..|.:::.:::...|.|
Mouse   330 YENIAKKSQAEAESWYQTKYEELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANL 394

  Fly   332 NARIRELENLLDTERQRHNQYIASLEAELQRMRD--EMAHQ----LQ-EYQGLMDIKVSLDLEIA 389
            .|.|.:.|       ||....:.....:|:.::|  :.|.|    || |||.|:.:.:.||:||.
Mouse   395 QAAIADAE-------QRGEMALKDARGKLEGLKDAPQKAKQDRTRLQKEYQELLSVNIYLDVEIT 452

  Fly   390 AYDKLLCGEERRLNIESPGR------PTT-----DSGISSNGSHLTASASSRS-------GRVTP 436
            .|.|||.|||.|.|.|..|.      |:|     ||...:|.:|.....||.|       |....
Mouse   453 TYRKLLEGEENRFNGEGIGPVNISVVPSTGSSGYDSAGGANRNHGLGGGSSHSYGRNHGLGGGFS 517

  Fly   437 SGRRSATPGISGSSA 451
            :||.....|..|||:
Mouse   518 TGRSRGIGGGLGSSS 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 90/369 (24%)
PRK13922 154..>221 CDD:473155 17/67 (25%)
LTD 474..574 CDD:460003
Gm5414NP_001003670.1 Keratin_2_head 15..148 CDD:465068 7/27 (26%)
Filament 151..464 CDD:459643 90/369 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.