DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and krt18.1

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_988944.1 Gene:krt18.1 / 394541 XenbaseID:XB-GENE-5820467 Length:429 Species:Xenopus tropicalis


Alignment Length:402 Identity:108/402 - (26%)
Similarity:190/402 - (47%) Gaps:65/402 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SARRVTLNTRVSRASTSTPVG--GASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRM 64
            |..|::: :|||...:....|  |.|..:.:|          ..|.|||.:|.||||||.|::|:
 Frog    44 SGARISV-SRVSSVGSGFGGGYSGVSNVNLIG----------GGQNEKETMQDLNDRLASYLERV 97

  Fly    65 RNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEEND 129
            |:||..|.:|  |:.:.|.|..:..|...:.|.|.:...||.:.::..|.::|.:.|        
 Frog    98 RSLEAANKKL--EVQIRQHTEKKGPSKDWSPYYKTIEDLRKQVFDSTLENSQLVLQI-------- 152

  Fly   130 DLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFE-DQAKELALENERLRRQLDD 193
                             :||||..:.:             |.|:| :.|..:::|.:     :..
 Frog   153 -----------------DNARLAADDF-------------RVKYEAEMAIRMSVEGD-----ITG 182

  Fly   194 LRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSR--RQIEISEIDGRLSRQYEAKL 256
            |||.::...::|::|||:.:||:|||.|..:.|..::||.:::  |.....|:|...|:.    |
 Frog   183 LRKLIDDTNVSRMNLENEIESLKEELIFLKKNHQDDVTELQAQVARSAVTVEVDAPKSQD----L 243

  Fly   257 QQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKL 321
            .:.:.|||.||:|..:.||:::|..|.:::.......|...:....|...|..:|..:..|..:|
 Frog   244 GKIMTELRAQYDGLAQKNRDDVEKWYQSKVDEHTVQVNLDTEALHSAKSSVTDLRRTVQSLEIEL 308

  Fly   322 QNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDL 386
            ::|.:..|.|...:.:.|.....|.:.......::||||.::|.:...|.||||.|::.|:.|:.
 Frog   309 ESLRNQKASLEGTLHDTEARYAMELEMLGGTAMAMEAELVQVRSDCQRQQQEYQALLNTKMKLEA 373

  Fly   387 EIAAYDKLLCGE 398
            ||..|.:||.|:
 Frog   374 EIHTYRRLLEGD 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 98/357 (27%)
ATP-synt_B <67..>142 CDD:304375 15/74 (20%)
MreC <178..>224 CDD:302802 14/45 (31%)
LTD 473..574 CDD:279300
krt18.1NP_988944.1 Head. /evidence=ECO:0000255 2..78 9/44 (20%)
Filament 78..384 CDD:306535 97/354 (27%)
Coil 1A. /evidence=ECO:0000255 79..114 18/36 (50%)
Linker 1. /evidence=ECO:0000255 115..130 3/14 (21%)
Coil 1B. /evidence=ECO:0000255 131..222 29/133 (22%)
Linker 12. /evidence=ECO:0000255 223..246 5/26 (19%)
Coil 2. /evidence=ECO:0000255 247..385 39/137 (28%)
Tail. /evidence=ECO:0000255 386..429 108/402 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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