DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and krt18

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_988944.1 Gene:krt18 / 394541 XenbaseID:XB-GENE-5820467 Length:429 Species:Xenopus tropicalis


Alignment Length:39 Identity:13/39 - (33%)
Similarity:20/39 - (51%) Gaps:6/39 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VTQQNRIDKLKASGSDDHVLRKQEEVL---QESMMMIPD 66
            |.:.||:.|.||:.   |.|.|..||.   :.|:..:|:
 Frog   122 VMKGNRVKKTKAAA---HFLPKLLEVAMYQEPSLHSVPE 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 7/25 (28%)
PRK13922 154..>221 CDD:473155
LTD 474..574 CDD:460003
krt18NP_988944.1 Head. /evidence=ECO:0000255 2..78
Filament 78..384 CDD:459643 13/39 (33%)
Coil 1A. /evidence=ECO:0000255 79..114
Linker 1. /evidence=ECO:0000255 115..130 3/7 (43%)
Coil 1B. /evidence=ECO:0000255 131..222 9/30 (30%)
Linker 12. /evidence=ECO:0000255 223..246
Coil 2. /evidence=ECO:0000255 247..385
Tail. /evidence=ECO:0000255 386..429
Blue background indicates that the domain is not in the aligned region.

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