DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and KRT39

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_998821.3 Gene:KRT39 / 390792 HGNCID:32971 Length:491 Species:Homo sapiens


Alignment Length:454 Identity:116/454 - (25%)
Similarity:190/454 - (41%) Gaps:101/454 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 EKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDET 110
            |||.:|.||:|||.|:.::|.||.||:.|..::   |:..|:|...|...|........:|..:.
Human    96 EKETMQILNERLANYLQKVRMLERENAELESKI---QEESNKELPVLCPDYLSYYTTIEELQQKI 157

  Fly   111 AKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFED 175
            ...||           ||..|..::|           |.:|   ..:::..||...::.|:..|.
Human   158 LCTKA-----------ENSRLVSQID-----------NTKL---TADDLRAKYEAEVSLRQLVES 197

  Fly   176 QAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIE 240
            .|              :.|::.|...||.:.|||.|.|||:|||......|.:|:...    |.:
Human   198 DA--------------NGLKQILNVLTLGKADLEAQVQSLKEELLCLKNNHKEEINSL----QCQ 244

  Fly   241 ISE-IDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALAT 304
            :.| :|..::....|.|.|.|||:|.|||..|..||:::|..::.:|:.|......::|......
Human   245 LGERLDIEVTAAPSADLNQVLQEMRCQYEPIMETNRKDVEQWFNTQIEELNQQVVTSSQQQQCCQ 309

  Fly   305 EEVRLMRTKIDGLNAKLQN-----------LEDTNAGLNARIRELENLLDTERQRHNQYIASLEA 358
            :|:..:|..::.|..:||.           |.:|.|...|.:.::::|:|           :|||
Human   310 KEIIELRRSVNTLEVELQAQHRMRDSQECILTETEARYTALLTQIQSLID-----------NLEA 363

  Fly   359 ELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHL 423
            :|..:|..:..|.|||:.|:|:|..|:.||..|..||...:.:       ||..........|..
Human   364 QLAEIRCALERQNQEYEILLDVKSRLECEITTYRSLLESSDGK-------RPCYPRATKCEPSPW 421

  Fly   424 TASASSRSGRVTPSGRRSATPGISGSSAVKRRR----------------TVIDESED-RTLSEY 470
            |   |.:||.:     .|..|..:.||....:.                |:..|.:| :.:|.|
Human   422 T---SCKSGAI-----ESTAPACTSSSPCSLKEHCSACGPLSRILVKICTITKEIKDGKVISSY 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 100/366 (27%)
PRK13922 154..>221 CDD:473155 19/66 (29%)
LTD 474..574 CDD:460003
KRT39NP_998821.3 Head 1..96 116/454 (26%)
Filament 95..404 CDD:459643 100/364 (27%)
Coil 1A 97..131 16/36 (44%)
Linker 1 132..142 3/9 (33%)
Coil 1B 143..243 31/142 (22%)
Linker 12 244..259 2/14 (14%)
Coil 2 260..403 45/153 (29%)
Tail 404..491 16/89 (18%)
Blue background indicates that the domain is not in the aligned region.

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