DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and KRT86

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_005268923.1 Gene:KRT86 / 3892 HGNCID:6463 Length:563 Species:Homo sapiens


Alignment Length:473 Identity:117/473 - (24%)
Similarity:202/473 - (42%) Gaps:112/473 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GATSPTSPTRTS----------------------RQQEKEELQHLNDRLACYIDRMRNLENENSR 73
            |...|:.|..|:                      :|:|||:::.||.|.|.:||::|.||.:|..
Human   146 GVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKSLNSRFAAFIDKVRFLEQQNKL 210

  Fly    74 LTQELNLAQDTVNRE--TSNLKAVYEKELAAARKLLDETAKEKAK-LEIDIKRLWEENDDLKPRL 135
            |..:|...|   |||  .|||:.::|..:        ||.:.:|: :|.|..||..|        
Human   211 LETKLQFYQ---NRECCQSNLEPLFEGYI--------ETLRREAECVEADSGRLASE-------- 256

  Fly   136 DKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAK-ELALENERLRRQLDDLRKQLE 199
                             .|...||...|      :||:|::.. ....|||.:.     |:|.::
Human   257 -----------------LNHVQEVLEGY------KKKYEEEVSLRATAENEFVA-----LKKDVD 293

  Fly   200 AETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELR 264
            ...|.:.|||...::|.:|:.|..:::.:|:...:|  .|..:.:..:|....:..:...:.|::
Human   294 CAYLRKSDLEANVEALIQEIDFLRRLYEEEIRVLQS--HISDTSVVVKLDNSRDLNMDCIIAEIK 356

  Fly   265 DQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNA 329
            .||:..:..:|.|.|..|.::.:.:||...|..:......||:..:...|..|.|:::|.:..|:
Human   357 AQYDDIVTRSRAEAESWYRSKCEEMKATVIRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNS 421

  Fly   330 GLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKL 394
            .|.|.:.:.|...:.........:|.||..||:.:.:||..::|||.:|:.|:.||:|||.|.:|
Human   422 KLEAAVAQSEQQGEAALSDARCKLAELEGALQKAKQDMACLIREYQEVMNSKLGLDIEIATYRRL 486

  Fly   395 LCGEERRL-------------------------NIESPGRPTTDSGISSNGSHL--TASASSRSG 432
            |.|||:||                         :..:|...|..|.:.||.:.:  |.:|.:.|.
Human   487 LEGEEQRLCEGVGSVNVCVSSSRGGVVCGDLCASTTAPVVSTRVSSVPSNSNVVVGTTNACAPSA 551

  Fly   433 RVTPSGRRSATPGISGSS 450
            ||          |:.|.|
Human   552 RV----------GVCGGS 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 97/359 (27%)
PRK13922 154..>221 CDD:473155 18/67 (27%)
LTD 474..574 CDD:460003
KRT86XP_005268923.1 Keratin_2_head 81..179 CDD:465068 4/32 (13%)
Filament 182..493 CDD:459643 97/359 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.