DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and KRT16

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_005548.2 Gene:KRT16 / 3868 HGNCID:6423 Length:473 Species:Homo sapiens


Alignment Length:401 Identity:123/401 - (30%)
Similarity:181/401 - (45%) Gaps:73/401 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 EKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRE-TSNLK--AVYEKELAAARKLL 107
            ||..:|:||||||.|:|::|.||..|:.|..::   :|...|: .|.:|  :.|.|.:...|..:
Human   117 EKVTMQNLNDRLASYLDKVRALEEANADLEVKI---RDWYQRQRPSEIKDYSPYFKTIEDLRNKI 178

  Fly   108 DETAKEKAK--LEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADR 170
            .....|.|:  |:||                           ||||..:.:..   ||...||.|
Human   179 IAATIENAQPILQID---------------------------NARLAADDFRT---KYEHELALR 213

  Fly   171 KKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRS 235
            :..|       .:...|||.||:|       ||||.|||.|.:.|:||||:..:.|.:|:...|.
Human   214 QTVE-------ADVNGLRRVLDEL-------TLARTDLEMQIEGLKEELAYLRKNHEEEMLALRG 264

  Fly   236 RR----QIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIE--LLYDNEIQNLKAAAN 294
            :.    .:|:....|       ..|.:.|.|:|||||.....||.:.|  .|...|..|.:.|:|
Human   265 QTGGDVNVEMDAAPG-------VDLSRILNEMRDQYEQMAEKNRRDAETWFLSKTEELNKEVASN 322

  Fly   295 RAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAE 359
            .....|  :..||..:|..:.||..:||:.....|.|...:.|.:.....:..:....|.|:|.:
Human   323 SELVQS--SRSEVTELRRVLQGLEIELQSQLSMKASLENSLEETKGRYCMQLSQIQGLIGSVEEQ 385

  Fly   360 LQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLT 424
            |.::|.||..|.||||.|:|:|..|:.|||.|.:||.||:..|:.:..      ||.|.:...:.
Human   386 LAQLRCEMEQQSQEYQILLDVKTRLEQEIATYRRLLEGEDAHLSSQQA------SGQSYSSREVF 444

  Fly   425 ASASSRSGRVT 435
            .|:||.|.|.|
Human   445 TSSSSSSSRQT 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 113/365 (31%)
PRK13922 154..>221 CDD:473155 24/66 (36%)
LTD 474..574 CDD:460003
KRT16NP_005548.2 Head 1..116
Filament 116..427 CDD:459643 113/365 (31%)
Coil 1A 117..152 16/37 (43%)
Linker 1 153..170 4/16 (25%)
Coil 1B 171..262 37/134 (28%)
Linker 12 263..285 4/28 (14%)
Coil 2 286..424 48/139 (35%)
Tail 425..473 10/37 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 428..473 10/34 (29%)
Blue background indicates that the domain is not in the aligned region.

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