DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and KRT6B

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_005546.2 Gene:KRT6B / 3854 HGNCID:6444 Length:564 Species:Homo sapiens


Alignment Length:448 Identity:122/448 - (27%)
Similarity:203/448 - (45%) Gaps:86/448 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQD----TVNRETSNLKAVYEKELAAA 103
            |.:|:|:::.||::.|.:||::|.||.:|..|..:..|.|:    ||.:   ||:.::|:.:...
Human   160 RAEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGTKTVRQ---NLEPLFEQYINNL 221

  Fly   104 RKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRY-NEVNGKYNQSL 167
            |:.||....|:.:|:.:::.:.:..:|||                     |:| :|:|       
Human   222 RRQLDNIVGERGRLDSELRNMQDLVEDLK---------------------NKYEDEIN------- 258

  Fly   168 ADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTE 232
                      |..|.|||.:     .|:|.::|..:.:|:|:.:..:|.:|:.|...::..||  
Human   259 ----------KRTAAENEFV-----TLKKDVDAAYMNKVELQAKADTLTDEINFLRALYDAEL-- 306

  Fly   233 TRSRRQIEISEIDGRLS--RQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANR 295
              |:.|..||:....||  ......|...:.|::.|||...:.:|.|.|..|..:.:.|:..|.|
Human   307 --SQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQTKYEELQITAGR 369

  Fly   296 AAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAEL 360
            .........:|:..:...|..|.:::.:::...|.|.|.|.:.|...:...:.....:..||..|
Human   370 HGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDAKNKLEGLEDAL 434

  Fly   361 QRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPG-------RPTTDSGIS- 417
            |:.:.::|..|:|||.||::|::||:|||.|.|||.|||.|||.|..|       :.|..||.. 
Human   435 QKAKQDLARLLKEYQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGQVNISVVQSTVSSGYGG 499

  Fly   418 ----------------SNGSHLTASA--SSRSGRVTPSGRRSATPGISGSSAVKRRRT 457
                            |.||.|....  ||.|||.|..|..|..   .|||.:|...|
Human   500 ASGVGSGLGLGGGSSYSYGSGLGVGGGFSSSSGRATGGGLSSVG---GGSSTIKYTTT 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 96/362 (27%)
PRK13922 154..>221 CDD:473155 16/67 (24%)
LTD 474..574 CDD:460003
KRT6BNP_005546.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
Head 2..162 1/1 (100%)
Keratin_2_head 17..159 CDD:465068
Filament 162..475 CDD:459643 96/362 (27%)
Coil 1A 163..198 12/34 (35%)
Linker 1 199..217 6/20 (30%)
Coil 1B 218..309 28/137 (20%)
Linker 12 310..333 6/22 (27%)
Coil 2 334..472 40/137 (29%)
Tail 473..564 26/85 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 533..564 9/25 (36%)
Blue background indicates that the domain is not in the aligned region.

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