DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt82

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001008803.1 Gene:Krt82 / 366991 RGDID:1359276 Length:493 Species:Rattus norvegicus


Alignment Length:465 Identity:115/465 - (24%)
Similarity:194/465 - (41%) Gaps:117/465 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVTLNTRVSRASTSTPVGGASTSSRVGAT--SPT-------------------SPT-RTSRQQEK 47
            |...|....|...::..|......|.||.  ||.                   .|| ::.::.||
  Rat    32 RSLCNVGFGRPRVASRCGMPGFGYRAGAACGSPACITPVTINESLLVPLELEIDPTVQSVKRDEK 96

  Fly    48 EELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAK 112
            |:::.||:|.|.:|:::|.||.:|..|..:.|..|...:.: ||::.::|..:.|.|:.||..:.
  Rat    97 EQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQRSCQ-SNMEPLFEGYICALRRQLDCVSG 160

  Fly   113 EKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQA 177
            :..:||.::..|.|..:..|                                      ||:|:  
  Rat   161 DHGRLEAELCSLQEALEGYK--------------------------------------KKYEE-- 185

  Fly   178 KELAL----ENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSR-- 236
             ||:|    |||.:     .|:|.::...|.:.|||...::|..|:.|...:..:|::..:|:  
  Rat   186 -ELSLRPCAENEFV-----TLKKDVDTAFLVKADLETNLEALEHEIEFLKALFEEEISLLQSQIS 244

  Fly   237 -----------RQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLK 290
                       |.:::..|...:..||:....:|..|....|:    ...||:.:...|...||:
  Rat   245 ETSVIVKMDNSRDLDVDGIVAEIKAQYDDIASRSKAEAEAWYQ----CRYEELRMTAGNHSDNLR 305

  Fly   291 AAANRAAQGSALA------TEEVRLMRTKIDGLNAKLQNLEDTNAGL-NARIRELENLLDTERQR 348
            ...|...:.:.|.      .|.|:..|.|::|..|:.:  :...|.| :|:.:            
  Rat   306 NRKNEILEMNKLIQRLQQDIETVKAQRCKLEGAIAQAE--QQGEAALSDAKCK------------ 356

  Fly   349 HNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTD 413
                :|.||..||:.:.:||..|:|||.:|:.|:.||:|||.|.:||.|||.|| .|..| |...
  Rat   357 ----LAGLEEALQKAKQDMACLLKEYQEVMNSKLGLDIEIATYRRLLEGEEHRL-CEGIG-PVNI 415

  Fly   414 SGISSNGSHL 423
            |..||.|:.|
  Rat   416 SVSSSKGAVL 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 94/379 (25%)
PRK13922 154..>221 CDD:473155 17/70 (24%)
LTD 474..574 CDD:460003
Krt82NP_001008803.1 Keratin_2_head <18..91 CDD:465068 11/58 (19%)
Filament 95..405 CDD:459643 94/378 (25%)
Blue background indicates that the domain is not in the aligned region.

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