DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and krt18a.1

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_848524.1 Gene:krt18a.1 / 352912 ZFINID:ZDB-GENE-030411-6 Length:431 Species:Danio rerio


Alignment Length:428 Identity:121/428 - (28%)
Similarity:206/428 - (48%) Gaps:65/428 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TRVSRASTS---TPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENEN 71
            ||:|.||.|   :.:|..|.||.: ..|.:..|......||..:|:||||||.|::::|.||..|
Zfish    46 TRISSASYSGVRSGLGVPSMSSSI-QVSASGSTGEIMGNEKMAMQNLNDRLASYLEKVRILEQAN 109

  Fly    72 SRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEI-DIKRLWEENDDLKPRL 135
            |:|  ||.:.:                            |.||...:: |..|.....|:|:   
Zfish   110 SKL--ELKIRE----------------------------ALEKRGPDVHDYSRFQPIVDELR--- 141

  Fly   136 DKKTKEATVAENNARLYENRYNEVNGKYNQSLAD--RKKFEDQAKELALENERLRRQLDDLRKQL 198
             ||..:||.  |||||.....|.      :..||  |.|:|   .||:: .:.:...:..|||.:
Zfish   142 -KKIFDATT--NNARLVLQIDNA------RLAADDFRVKYE---SELSI-RQGVEADITGLRKVI 193

  Fly   199 EAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQEL 263
            :...|.|::||::.::|:|||.|..:.|..|:.|.|:  ||..|.:...:.......|.|.::|:
Zfish   194 DDTNLNRMNLESEIEALKEELIFLKKNHDNEVMELRN--QISQSGVQVDVDAPKGQDLSQIMEEI 256

  Fly   264 RDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTN 328
            |.:||.....|:||::..::::|..::....:..:....|..||..:|.:|..|..:|::.::..
Zfish   257 RAKYEKMALKNQEELKAWHESQITEVQVQVTQNTEALQGARSEVNELRRQIQTLEIELESQKNLK 321

  Fly   329 AGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDK 393
            ..|...:|:.|...:.|.:..|..|..|||||.::|..:.||.|||:.|::||:.|:.|||.|.:
Zfish   322 GSLEGTLRDTEMRYNMEIENLNTIILQLEAELTQLRGNIQHQTQEYEALLNIKMKLEAEIATYRR 386

  Fly   394 LLCG----------EERRLNIESPGRPTTDSGISSNGS 421
            ||.|          |::::.:.:..:...|..:.|:.:
Zfish   387 LLDGGDFKLQDALEEQKKVKVMTVTQTLVDGKVVSSST 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 107/368 (29%)
PRK13922 154..>221 CDD:473155 19/68 (28%)
LTD 474..574 CDD:460003
krt18a.1NP_848524.1 Head. /evidence=ECO:0000255 2..83 12/37 (32%)
Filament 83..394 CDD:459643 106/358 (30%)
Coil 1A. /evidence=ECO:0000255 84..119 18/64 (28%)
Linker 1. /evidence=ECO:0000255 120..136 4/15 (27%)
Coil 1B. /evidence=ECO:0000255 137..228 33/106 (31%)
Linker 12. /evidence=ECO:0000255 229..252 5/24 (21%)
Coil 2. /evidence=ECO:0000255 253..390 42/136 (31%)
Tail. /evidence=ECO:0000255 391..431 3/34 (9%)
Blue background indicates that the domain is not in the aligned region.

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