DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt78

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_997652.4 Gene:Krt78 / 332131 MGIID:1917529 Length:1068 Species:Mus musculus


Alignment Length:456 Identity:109/456 - (23%)
Similarity:199/456 - (43%) Gaps:108/456 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTV-NRETSNLKAVYEKELAAARKL 106
            :.||..|::.||::.|.:||::|.||.:|..|..:..|.|... ||....|:.::|..||..|:.
Mouse   102 KTQETREIRSLNNQFASFIDKVRFLEQQNKVLETKWELLQQLQGNRSPQGLECIFETCLARLRQQ 166

  Fly   107 LDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRK 171
            |:|..:|:..|:.::|                            .|:::.:|...||:|      
Mouse   167 LEELQRERRALDSELK----------------------------TYQDQEDEYKSKYDQ------ 197

  Fly   172 KFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSR 236
               :..|..:::|:.:     .|:|.::....:::|||...:||:|.:.|..:::.:||.:.:::
Mouse   198 ---EAYKHASVQNDFV-----VLKKDVDEVFQSKMDLEGNLESLKEHVCFLTRLYEEELGQLKTQ 254

  Fly   237 -------------RQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQN 288
                         |.::.|:|               :.|:|.:||...|.::.|.|.::..:.|.
Mouse   255 ADDMSVVLSMDNNRCLDFSDI---------------IAEVRARYEEITRTSKAEAEAVFQTKYQE 304

  Fly   289 LKAAANRAAQGSALATEEVRL--MRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQ 351
            |:.:|.  .||:::...:|::  :|..|..|.:::.:|...|..|.:.|.:.|...:...:....
Mouse   305 LQESAQ--LQGNSMKEAQVQISQLRQAIHRLQSQIGSLRKQNDSLQSAIADAEQQGEMAVRDAQA 367

  Fly   352 YIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIES---------- 406
            .:..|||.|:..:.:||..|::||.||..|:|||:|||.|.:||..||.|::.|.          
Mouse   368 KLDELEAALRTAKQDMAQMLRDYQELMGTKLSLDVEIAMYRRLLESEECRISTEHTSQVTVSITE 432

  Fly   407 ---------------PGRPTTDSGISSN---GSHLTASASSRSGRVTPSGRRSATPGISGSSAVK 453
                           |||..|...:...   |.|:........|:||..||     |..|...|.
Mouse   433 GSIVPGRTCGGQVVVPGRIGTGQVVMPGRECGGHVVMPGRGSGGQVTIPGR-----GSGGQVTVP 492

  Fly   454 R 454
            |
Mouse   493 R 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 92/371 (25%)
PRK13922 154..>221 CDD:473155 14/66 (21%)
LTD 474..574 CDD:460003
Krt78NP_997652.4 Keratin_2_head <2..101 CDD:465068
Filament 104..417 CDD:459643 92/371 (25%)
KLF18_N 475..>635 CDD:410566 9/24 (38%)
KLF18_N 585..778 CDD:410566
KLF18_N 749..958 CDD:410566
Blue background indicates that the domain is not in the aligned region.

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