DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt84

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001008812.2 Gene:Krt84 / 315320 RGDID:1359402 Length:608 Species:Rattus norvegicus


Alignment Length:465 Identity:120/465 - (25%)
Similarity:205/465 - (44%) Gaps:81/465 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 GGASTSSRVGAT-SPTSPTRTS----------------------RQQEKEELQHLNDRLACYIDR 63
            ||.....|:|.. .|::|..|:                      ::.|||:::.||::.|.:||:
  Rat   130 GGPGFGYRIGGIGGPSAPAITAVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDK 194

  Fly    64 MRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEEN 128
            :|.||.:|..|..:.:..||. ....|||:.:::..:.:.|:.||....::|:|:.:...:    
  Rat   195 VRFLEQQNKLLETKWSFLQDQ-KCARSNLEPLFDNYITSLRRQLDVLVSDQARLQAERNHM---- 254

  Fly   129 DDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDD 193
            .|:.....||.:|..|...||                                 |||.:.     
  Rat   255 QDILEGFKKKYEEEVVFRANA---------------------------------ENEFVA----- 281

  Fly   194 LRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQ 258
            |:|.::|..|.:.|||....:|.:|:.|...::.:|:...:|  .|..:.:..::....:..|..
  Rat   282 LKKDVDAAFLNKSDLEANVDALAQEIEFLKALYLEEIQLLQS--HISETSVIVKMDNSRDLNLDG 344

  Fly   259 SLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQN 323
            .:.|::.|||...|.:|.::|..|..:.:.::..|.:.........:|:..:...|..|..::::
  Rat   345 IIAEVKAQYEEVARRSRADVESWYQTKYEEMRVTAGQHCDNLRNTRDEINELTRLIQRLKTEIEH 409

  Fly   324 LEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEI 388
            .:...|.|.|.:.|.|...:.........:..||..||:.:.:||.||:|||.||:.|::||:||
  Rat   410 TKAQCAKLEAAVAEAEQQGEAALNDAKCKLTDLEGALQQAKQDMARQLREYQELMNAKLALDIEI 474

  Fly   389 AAYDKLLCGEERRLNIESPGRPTTDSGISSNG-------SHLTASASSRSGRVT---PSGRRSAT 443
            ..|.|||.|||.|: .|..| |...|..||.|       |.:..|..|.||.||   .||.| ||
  Rat   475 VTYRKLLEGEEIRI-CEGVG-PVNISVSSSRGGVLCGPESLVCGSGLSHSGGVTFSSSSGIR-AT 536

  Fly   444 PGISGSSAVK 453
            .||..||:::
  Rat   537 GGILASSSLR 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 89/355 (25%)
PRK13922 154..>221 CDD:473155 12/66 (18%)
LTD 474..574 CDD:460003
Krt84NP_001008812.2 Keratin_2_head 16..173 CDD:465068 7/42 (17%)
Filament 177..487 CDD:459643 89/354 (25%)
Blue background indicates that the domain is not in the aligned region.

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