DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and prph

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001306166.1 Gene:prph / 30259 ZFINID:ZDB-GENE-990415-207 Length:442 Species:Danio rerio


Alignment Length:500 Identity:131/500 - (26%)
Similarity:227/500 - (45%) Gaps:113/500 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RASTSTPVGGASTSSRVG----ATSPTSP----TRTS--------------------------RQ 44
            |.|.....|..|.|||:|    ::.|:.|    :|:|                          |.
Zfish     7 RTSHHRSYGTPSVSSRIGGRYTSSIPSRPVDFRSRSSAPAPRLSYDKVDFSLAEAVNQEFLATRS 71

  Fly    45 QEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDE 109
            .||.|||.||||.|.:|:::|.||.:||||||||...::.....:..|..:.::|:...|:.|:.
Zfish    72 NEKRELQELNDRFASFIEKVRYLEQQNSRLTQELGQFKEQQQGPSGRLGDLCQQEMRELRRQLEL 136

  Fly   110 TAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFE 174
            ..|::.:::::...|.|:...||.||:::.::...||||..|:                      
Zfish   137 MGKDRDQMQVERDNLAEDVALLKQRLNEEMQKREEAENNLTLF---------------------- 179

  Fly   175 DQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETR----- 234
                                ||.::..||||::||.:.:||.:|:.|..::|.:|:.:.:     
Zfish   180 --------------------RKDVDDATLARLELERKIESLMDEIEFLKKMHDEEIQDVQVSVQS 224

  Fly   235 SRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQG 299
            .:.::|:.|...|      ..|..:|:::|.|||.....|.:|.|..|.::..:|..:|.|.|:.
Zfish   225 QQMKMEVMETSSR------PDLTAALRDIRSQYESIASKNMQESEEWYKSKFADLTDSAKRNAEA 283

  Fly   300 SALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMR 364
            ...:.::...:|.:|...|..::.|:.||..|..::||:|.....|...:...:..||.|::.::
Zfish   284 MRQSKQDNNDLRRQIQAQNCDIEALKSTNEALLRQMREMEEQFTLEAGNYQDAVGRLEEEIRHLK 348

  Fly   365 DEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASASS 429
            :||:..|:|||.|:::|::||:|||.|.|||.|||.|:.:.....|:. ||.|.:....:..|..
Zfish   349 EEMSRHLREYQDLLNVKMALDIEIATYRKLLEGEESRIAVPIMKMPSM-SGHSGDYGQFSDPAPG 412

  Fly   430 ----------RSGRVTPSGRRSATPGISGSSAVKRRRTVIDESED 464
                      |.|.|           :..|:..|.|    ||.:|
Zfish   413 KKVVIKTVEIRDGEV-----------VKESTKEKAR----DEKKD 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 103/360 (29%)
PRK13922 154..>221 CDD:473155 11/66 (17%)
LTD 474..574 CDD:460003
prphNP_001306166.1 Filament_head 1..71 CDD:461414 12/63 (19%)
Filament 72..385 CDD:459643 103/360 (29%)
Blue background indicates that the domain is not in the aligned region.

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