DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and inab

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_571107.2 Gene:inab / 30230 ZFINID:ZDB-GENE-990415-83 Length:469 Species:Danio rerio


Alignment Length:489 Identity:135/489 - (27%)
Similarity:221/489 - (45%) Gaps:105/489 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASTSTPVGGAST----------SSRVGATS--------PTSPTRTSRQ----------------- 44
            ||:...:.|.||          |||.|..|        |:|..|::|.                 
Zfish    10 ASSYRKIFGDSTRFSASPSRLSSSRSGFKSQSVNRPNIPSSYKRSTRSGFPSSSLDSFDFTQSTV 74

  Fly    45 ----------QEKEELQHLNDRLACYIDRMRNLENENSRLTQEL-NLAQDTVNRETSNLKAVYEK 98
                      .|||::|.||||.|.:|:::||||..|..|..|| .|.|.  ..|.|.|..:|::
Zfish    75 LNNEFKIIRTNEKEQMQGLNDRFAMFIEKVRNLEQHNKVLETELVTLRQR--QTEPSRLAELYQQ 137

  Fly    99 ELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKY 163
            |:...|..|:|...||       .::..|.|.::..|.|             |:|          
Zfish   138 EIRELRSQLEELNAEK-------NQMMFERDSIEEDLQK-------------LHE---------- 172

  Fly   164 NQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQ 228
                    |||::.:    ..|...:.|...:|.::..::.|:|||.:.:||.:|:.|..:||.:
Zfish   173 --------KFEEEMR----MREEAEQTLRAFKKDVDNASMVRLDLEKKVESLLDEINFLRKVHEE 225

  Fly   229 ELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAA 293
            |:.|..:..|.....::..:::   ..|..:|:::|.|||.....|.:..|..|.::..:|...|
Zfish   226 EVAELMNMIQASQVSVEMEVAK---PDLTSALKDIRGQYEAMASKNLQSAEEWYKSKFADLSEQA 287

  Fly   294 NRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEA 358
            |::.:....:.||:...|.::.....::::|..||..|..:|.|:|:..:.|...:...|..||.
Zfish   288 NKSNEVIRASREELNEFRRQLQSKTIEIESLRGTNESLERQIHEMEDRHNAEIMGYQDSIGELEN 352

  Fly   359 ELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLN--IESPGRPTTDSGISSNG- 420
            :|:..:.|||..|:|||.|:::|::||:|||||.|||.|||.|::  |..|    |.:.:||.. 
Zfish   353 DLRTTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRISTGITYP----TPASVSSYSY 413

  Fly   421 -SHLTASASSRSGRVTPSG---RRSATPGISGSS 450
             |.|.:|.|..|.:.....   ::|..|| .|||
Zfish   414 QSRLYSSTSMSSKKEVKDDDDKQQSGKPG-KGSS 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 104/356 (29%)
ATP-synt_B <67..>142 CDD:304375 22/75 (29%)
MreC <178..>224 CDD:302802 11/45 (24%)
LTD 473..574 CDD:279300
inabNP_571107.2 Filament_head 8..84 CDD:282575 14/73 (19%)
Filament 85..395 CDD:278467 104/356 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.