DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and Krt36

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001008759.1 Gene:Krt36 / 287698 RGDID:1305792 Length:468 Species:Rattus norvegicus


Alignment Length:496 Identity:123/496 - (24%)
Similarity:212/496 - (42%) Gaps:102/496 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SRASTSTPVGGASTSSRVGATSPTSPTRTS------------------------------RQQEK 47
            ||.|:...:|.....|.||.....|..||.                              ...||
  Rat    25 SRISSIHSMGSCRAPSLVGTVGSVSSFRTGFSGLGSCLPGSYLSSSGFAGSGGWFCEGAFNGNEK 89

  Fly    48 EELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDE--- 109
            ..:|.||||||.|::::|.||.||::|...:   ::....:...:...|:.....|..|..:   
  Rat    90 ATMQVLNDRLANYLEKVRQLEQENAQLECRI---REWYESQIPYICPDYQSYFKTAEDLQQKILL 151

  Fly   110 TAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFE 174
            |..|.|:|.:.|                         :||:|..:.:             |.|:|
  Rat   152 TKSENARLILQI-------------------------DNAKLAADDF-------------RTKYE 178

  Fly   175 DQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQI 239
               .||:| .:.:...::.||:.|:..||.:.|||.|.:||:|||....:.|.:|:...|     
  Rat   179 ---TELSL-RQMVEADINGLRRILDELTLCKADLEAQVESLKEELLCLKRNHEEEVNALR----- 234

  Fly   240 EISEIDGRLSRQYEA----KLQQSLQELRDQYEGQMRINREEIELLYDNEIQNL-KAAANRAAQG 299
              |::..||:.:.:|    .|.:.|.::|.|||..:..||.::|..::.:.:.| :...:.:.|.
  Rat   235 --SQLGDRLNVEVDAAPPVDLNKILDDMRCQYETLVENNRRDVEAWFNTQTEELNQQVVSSSEQL 297

  Fly   300 SALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMR 364
            ....||.:.|.|| ::.|..:||........|.:.:.|.|....::..:....|.::|::|..:|
  Rat   298 QCCQTEIIELRRT-VNALEIELQAQHSMRNSLESTLAETEARYSSQLGQMQCLITNVESQLAEIR 361

  Fly   365 DEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRP-TTDSGISSNGSHLTASAS 428
            .::..|..|||.|:|:|..|:.|||.|.:||.||:.:|    |..| :||.........:.:::.
  Rat   362 CDLERQNHEYQVLLDVKARLESEIATYRRLLEGEDCKL----PAHPCSTDCKPPVRVPFVPSTSC 422

  Fly   429 SRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESED-RTLS 468
            :.:...||:|  ..||....|:.:   ||:.:|..| |.:|
  Rat   423 TPAVPCTPAG--PCTPASQVSTQI---RTITEEIRDGRVIS 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 96/363 (26%)
ATP-synt_B <67..>142 CDD:304375 13/77 (17%)
MreC <178..>224 CDD:302802 17/45 (38%)
LTD 473..574 CDD:279300
Krt36NP_001008759.1 Filament 87..398 CDD:278467 96/363 (26%)
RILP-like 241..381 CDD:304877 35/140 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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