DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt8

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_955402.1 Gene:Krt8 / 25626 RGDID:2984 Length:483 Species:Rattus norvegicus


Alignment Length:515 Identity:137/515 - (26%)
Similarity:229/515 - (44%) Gaps:114/515 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SRASTSTPVGGASTS--SRVGATSPT--------------------------SPTRTS------- 42
            ||:.||.|....|:|  ||||::|.:                          :|.:..       
  Rat    22 SRSFTSGPGARISSSSFSRVGSSSSSFRGSLGGFGGAGVGGITAVTVNQSLLNPLKLEVDPNIQA 86

  Fly    43 -RQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKL 106
             |.||||:::.||::.|.:||::|.||.:|..|..:.:|.|.. ....||:..::|..:...|:.
  Rat    87 VRTQEKEQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQ-KTSRSNMDNMFESYINNLRRQ 150

  Fly   107 LDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRY-NEVNGKYNQSLADR 170
            |:...:||.|||:::..:....:|.|                     |:| :|:|          
  Rat   151 LEALGQEKLKLEVELGNMQGLVEDFK---------------------NKYEDEIN---------- 184

  Fly   171 KKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRS 235
                   |...:|||.:.     ::|.::...:.:|:||::.:.|.:|:.|..|:|.:|:.|.:|
  Rat   185 -------KRTEMENEFVL-----IKKDVDEAYMNKVELESRLEGLTDEINFLRQIHEEEIRELQS 237

  Fly   236 RRQIEISEIDGRLSRQYEAKLQQS--LQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQ 298
                :||:....||......|...  :.|:|.|||.....:|.|.|.:|..:.:.|:..|.:...
  Rat   238 ----QISDTSVVLSMDNSRSLDMDSIIAEVRAQYEEIANRSRAEAETMYQIKYEELQTLAGKHGD 298

  Fly   299 GSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRM 363
            ....:..|:..|...|..|.|::..|:...|.|.|.|.:.|...:...:..|..:..|:..||:.
  Rat   299 DLRRSKTEISEMNRNISRLQAEIDALKGQRATLEAAIADAEQRGELAVKDANAKLEDLKNALQKA 363

  Fly   364 RDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTAS-- 426
            :.:||.||:|||.||::|::||:|||.|.|||.|||.||          :||:.:...|...:  
  Rat   364 KQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRL----------ESGMQNMSIHTKTTSG 418

  Fly   427 -----ASSRSGRVTPS---GRRSATPG---ISGSSAVKRRRTV----IDESEDRTLSEYS 471
                 :||..|..:|.   |..|..||   :.|||...|.:.|    |:..:.:.:||.|
  Rat   419 YAGGLSSSYGGLTSPGFSYGMSSFQPGFGSVGGSSTYSRTKAVVVKKIETRDGKLVSESS 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 101/358 (28%)
PRK13922 154..>221 CDD:473155 14/67 (21%)
LTD 474..574 CDD:460003
Krt8NP_955402.1 Head 1..90 14/67 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 10/20 (50%)
Keratin_2_head <63..87 CDD:465068 1/23 (4%)
Filament 90..401 CDD:459643 101/358 (28%)
Coil 1A 91..126 13/34 (38%)
Linker 1 127..143 4/16 (25%)
Coil 1B 144..235 27/133 (20%)
Linker 12 236..259 6/26 (23%)
Coil 2 260..398 45/137 (33%)
Necessary for interaction with PNN. /evidence=ECO:0000250 261..382 35/120 (29%)
Tail 399..483 23/90 (26%)
Blue background indicates that the domain is not in the aligned region.

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