DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt79

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_666175.1 Gene:Krt79 / 223917 MGIID:2385030 Length:531 Species:Mus musculus


Alignment Length:521 Identity:119/521 - (22%)
Similarity:222/521 - (42%) Gaps:138/521 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASTSTPVGGASTSSRVG------ATSPTSP------------------------TRTSRQQEKEE 49
            ||:...:||..:.:.||      ...|..|                        .:..|.||:|:
Mouse    78 ASSGRALGGFGSGAYVGLGASRQTFGPVCPPGGIQEVTVNQSLLTPLNVEIDPEIQRVRTQEREQ 142

  Fly    50 LQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETS---NLKAVYEKELAAARKLLDETA 111
            ::.||::.|.:||::|.||.:|..|..:..|.|:. ::.|.   :|:..:|..|:..|:.||...
Mouse   143 IKTLNNKFASFIDKVRFLEQQNKVLETKWALLQEQ-SQNTGVARSLEPFFENYLSTLRRQLDTKQ 206

  Fly   112 KEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRY-NEVNGKYNQSLADRKKFED 175
            .|:.:|:::::.:.:..:|.|                     |:| :|:|               
Mouse   207 SERGRLDMELRNVQDNLEDFK---------------------NKYEDEIN--------------- 235

  Fly   176 QAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETR------ 234
              |..|||||.:.     |:|.::|..:.|:||..:..||.:|:.|..|:...||::.:      
Mouse   236 --KRTALENEFVL-----LKKDVDAAYMGRMDLHGKVDSLTQEIDFLQQLFEMELSQVQTNVSDT 293

  Fly   235 -------SRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAA 292
                   :.|.:::..|...:..|||...|:|..|....|:.:.    ||:::.......:|:..
Mouse   294 NVILSMDNNRNLDLDSIIAEVKAQYELIAQKSRAEAESWYQTKY----EELQVTAGKHGDSLRDT 354

  Fly   293 ANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELEN-----LLDTERQRHNQY 352
            .|..|:    .|...:.::.::|....:.|.|:       ..|.|.|.     |.|.:::     
Mouse   355 KNEIAE----LTRTTQRLQGEVDAAKKQCQQLQ-------TAIAEAEQNGEMALKDAKKK----- 403

  Fly   353 IASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESP--------GR 409
            :..|:..|.:.::::|..|:|||.|:.:|::||:|||.|.|||..||.|::.:.|        |.
Mouse   404 LGDLDTALHQAKEDLARMLREYQDLVSVKLALDMEIATYRKLLESEESRMSGDCPSAISISVTGN 468

  Fly   410 PTT---------DSGISSNGSHLTASASSRSGRVTPSGRRSATPG-ISGSSAVKRRRTVIDESED 464
            .|:         .:|:|..|    |..:|:.|..:.....:|..| :||.:::.|:.|.:..|..
Mouse   469 STSVCAGGTAGFGNGLSLGG----AGGASKGGFGSSVSYGAAKGGQVSGGTSILRKTTTVKTSSR 529

  Fly   465 R 465
            |
Mouse   530 R 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 92/377 (24%)
PRK13922 154..>221 CDD:473155 19/67 (28%)
LTD 474..574 CDD:460003
Krt79NP_666175.1 Head 1..138 9/59 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..55
Keratin_2_head <62..135 CDD:465068 8/56 (14%)
Filament 138..452 CDD:459643 92/377 (24%)
Coil 1A 139..174 12/34 (35%)
Linker 1 175..194 4/19 (21%)
Coil 1B 195..286 31/133 (23%)
Linker 12 287..310 1/22 (5%)
Coil 2 311..449 39/157 (25%)
Tail 450..531 19/85 (22%)
Blue background indicates that the domain is not in the aligned region.

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