DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and lmnb1

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_694504.2 Gene:lmnb1 / 195816 ZFINID:ZDB-GENE-020424-2 Length:588 Species:Danio rerio


Alignment Length:574 Identity:207/574 - (36%)
Similarity:335/574 - (58%) Gaps:32/574 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELN 79
            ||.:....|..:.||..:::|.||.|.||.|||||||.||||||.|||.:|:||:|||.|..::.
Zfish     2 ASAACTPAGQQSLSRGTSSTPLSPARISRLQEKEELQQLNDRLAAYIDTVRSLESENSVLQIQIR 66

  Fly    80 LAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATV 144
            ..:|..|||.:.|:.:||.|||.|||.||:||:|:|:|:|::.::..|.:.|:....||..:.|.
Zfish    67 EREDVRNRELTGLRTLYETELADARKALDDTARERARLQIELGKIKSEQEQLQHTYAKKDADLTS 131

  Fly   145 AENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLE 209
            ::|..:..|...|......|.::::||..|:...:|.:..:.|...|...:|||..|||.|||||
Zfish   132 SQNRLKDVEALLNAKEAALNTAVSERKTLENTLSDLQIRVQELEGGLISAKKQLSDETLLRVDLE 196

  Fly   210 NQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRIN 274
            |:.|||.|||.|:..:..:|:.:||.|.:..:.|:|.....:||.||.|:|.::|.|::.|:::.
Zfish   197 NRCQSLMEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQMEYEFKLAQALTDMRQQHDEQVKLY 261

  Fly   275 REEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELE 339
            :||:|..|.::::|::.::...:..:::|.||:|....:::.|..:|.||:........||.|||
Zfish   262 KEEMEQTYVSKLENIRLSSEMNSSSASMAREELRESTLRVESLAGQLANLQKEARAWQDRINELE 326

  Fly   340 NLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNI 404
            ..|..|:....:.:|..|.|:..:|.:|..||.||:.|:|:|::||:||.||.|||.|||.||.:
Zfish   327 GALSHEKDLSRRLLAEKEREIAEIRAKMQQQLDEYEQLLDVKLALDMEINAYRKLLEGEEERLKL 391

  Fly   405 ESPGRPTTDSGISSNGSHLTAS--ASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTL 467
             ||          |..|.:|.|  :||||.|.|..               ||:|..::|||..:.
Zfish   392 -SP----------SPSSRVTVSRASSSRSVRTTRG---------------KRKRVDVEESEASSS 430

  Fly   468 SEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGA 532
            ...:.:|:|.|::.|.|.||:|:||:|||...::..:.|:||||..|:....:||:....:..|.
Zfish   431 VSIAHSASATGNVSIDELDVDGKFIRLHNNSEQDQPMAGFQLTRTIGEVTATYKFTAKYNLKAGQ 495

  Fly   533 SVTIWSVDAGTAHDPPNNLVMKKK--WPVANSMR-SVLANADKEVRVLS-IYNT 582
            .||||:.:||.:.:||.:|:.|.:  |....::: ::|:.|.::|.|.| ::.|
Zfish   496 KVTIWASNAGISSNPPADLIWKNQPSWGTGENIKVALLSPAGEKVAVRSTVFKT 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 137/355 (39%)
ATP-synt_B <67..>142 CDD:304375 31/74 (42%)
MreC <178..>224 CDD:302802 22/45 (49%)
LTD 473..574 CDD:279300 35/103 (34%)
lmnb1NP_694504.2 Filament 32..388 CDD:278467 137/355 (39%)
LTD 436..544 CDD:279300 37/107 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 268 1.000 Domainoid score I1815
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 393 1.000 Inparanoid score I1927
OMA 1 1.010 - - QHG48052
OrthoDB 1 1.010 - - D204815at33208
OrthoFinder 1 1.000 - - FOG0001052
OrthoInspector 1 1.000 - - mtm6402
orthoMCL 1 0.900 - - OOG6_103212
Panther 1 1.100 - - O PTHR45721
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X632
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.980

Return to query results.
Submit another query.