DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and ifb-2

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001293525.1 Gene:ifb-2 / 173973 WormBaseID:WBGene00002054 Length:577 Species:Caenorhabditis elegans


Alignment Length:596 Identity:144/596 - (24%)
Similarity:278/596 - (46%) Gaps:62/596 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSARRVTLNTRVSRASTSTPVGGASTSSRVGATSPTSPTR--TSRQQEKEELQHLNDRLACYIDR 63
            |||    ::..:.|.:|:|     |:||..|.::..:...  .|.::||:|:|.||.||..||.|
 Worm     1 MSA----VSYSMHRTTTTT-----SSSSHGGVSAGHAAEEFVASAEREKQEMQQLNSRLEVYISR 56

  Fly    64 MRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEEN 128
            :|.||:.|..|..||:..:.::..:...:|..:...|...|:.:.|.......:|:.:.||.::.
 Worm    57 VRQLEDRNKELVIELDTLRGSLGNDIGQIKFKFNDSLVKVRREISEAHSGTIGVEVKVDRLRDDL 121

  Fly   129 DDLKPRLDKKTKE---------ATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALEN 184
            :|.:.|.::..:|         ..:::..|.|..|:     .:|...|       |:.|.|..|.
 Worm   122 NDYRHRYEEARREVEREKTTWGGAISQAQAELDTNK-----SRYAAIL-------DEEKRLYAEQ 174

  Fly   185 ERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLS 249
            ::|..||...:.:|:|..:.|..|:.:...|:.||.|..::|:||:||.|:.    :::......
 Worm   175 DQLYLQLAAAKDELDAAIVDRRRLQAEEDDLKIELEFLGRIHSQEITELRTL----LAQAPADTR 235

  Fly   250 RQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKI 314
            ..::.:|..:::|::.:|:..::..|.::|.::.::|..::::.....:.:....||:|.|...|
 Worm   236 EFFKNELALAIREIKAEYDKIIQTTRVDLETIFQSKISAVESSIVSKNEAAVFRQEEIRKMNESI 300

  Fly   315 DGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMD 379
            ..|.|||..||..|:.|......|:..|..:::.:...:...:..|:.||::....:.|.|.|::
 Worm   301 TTLRAKLSELEARNSALEREANTLQIQLGEDQRAYESELHKRDNALRFMREDCQTLIAELQALLN 365

  Fly   380 IKVSLDLEIAAYDKLLCGEERRLNIESPG-----RPTTDSGISSNGSHLTASASSRSGR------ 433
            .|.:||.|||.|.||:..||.|......|     :.||.:...|....|.....|.|.:      
 Worm   366 TKQTLDTEIAIYRKLVESEEGRFTHVGQGVVVAQQETTRTEGDSTPVVLNDQQYSDSHQYQQYPE 430

  Fly   434 VTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIEADVEGRFIKLHN-K 497
            |.|.|.....|       |::...  |..|.:|.|.:..:  |||::.|:|.|.:|::|.|.| .
 Worm   431 VYPQGTLRLVP-------VEQDHW--DSGEVQTRSSFKRH--AKGNVSIVECDPQGKYIILENTS 484

  Fly   498 GTEEINLTGWQLTR-IAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNNLVMKK--KWPV 559
            |:...:::.:::.| |.|.:...|:......:.....:.|:..::|..:.||:::||:.  .|..
 Worm   485 GSVAEDVSNFEIRRVIDGVQAFVFRLPSHLVIQQHGHLKIYGRNSGGINSPPDSIVMESHPSWGQ 549

  Fly   560 ANSMRSVLANA 570
            ...:.:.|.|:
 Worm   550 GGQVETFLYNS 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 92/364 (25%)
ATP-synt_B <67..>142 CDD:304375 16/83 (19%)
MreC <178..>224 CDD:302802 14/45 (31%)
LTD 473..574 CDD:279300 24/102 (24%)
ifb-2NP_001293525.1 Filament 39..387 CDD:278467 92/363 (25%)
ATP-synt_B 153..307 CDD:304375 38/169 (22%)
LTD 462..568 CDD:279300 24/99 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 196 1.000 Domainoid score I1825
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H7818
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D204815at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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