DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Lmnb2

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_034852.3 Gene:Lmnb2 / 16907 MGIID:96796 Length:615 Species:Mus musculus


Alignment Length:584 Identity:218/584 - (37%)
Similarity:332/584 - (56%) Gaps:58/584 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELN 79
            |:||..   ||.....|..:|.||||.||.||||||:.||||||.||||:|.||.||.||...::
Mouse    15 AATSAM---ASLPPHAGPATPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLRIS 76

  Fly    80 LAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATV 144
            ..::...||.|.:|.:||.|||.||::|||||:|:|:|:|:|.::..|.::.:....|:..|.||
Mouse    77 EKEEVTTREVSGIKTLYESELADARRVLDETARERARLQIEIGKVQAELEEARKSAKKREGELTV 141

  Fly   145 AENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQL---DD----LRKQLEAET 202
            |:...:..|:.::....:...:|:|::..|.:..|       ||.||   :|    .:||||.||
Mouse   142 AQGRVKDLESLFHRSEAELATALSDKQGLETEVAE-------LRAQLAKAEDGHAVAKKQLEKET 199

  Fly   203 LARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQY 267
            |.||||||:.|||:|||||...|..:|:.|||.|.:..:.|:|....::|:.|:.|:|::||.|:
Mouse   200 LMRVDLENRCQSLQEELAFSKSVFEEEVRETRRRHERRLVEVDSSRQQEYDFKMAQALEDLRSQH 264

  Fly   268 EGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLN 332
            :.|:|:.|.|:|..|..::.|.|..:::..:.:..|.||::..|.:::.|:.:|..|:...:...
Mouse   265 DEQVRLYRVELEQTYQAKLDNAKLLSDQNDKAAHAAREELKEARMRVESLSYQLLGLQKQASAAE 329

  Fly   333 ARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCG 397
            ..|.|||..|..||.:..:.:.:.|.|:..:||.|..||.|||.|:|||::||:||:||.|||.|
Mouse   330 NHIHELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDIKLALDMEISAYRKLLEG 394

  Fly   398 EERRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGIS-GSSAVKRRRTVIDE 461
            ||.||.:.    |:..|.|:.  |..|:|:||.||           .|:| |....||||.   |
Mouse   395 EEERLKLS----PSPSSRITI--SRATSSSSSSSG-----------VGMSVGQGRGKRRRL---E 439

  Fly   462 SEDRT--------------LSEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTR- 511
            :||.:              |::.:|   |.|.:.|.|.|.||||::|.|...::.:|..|::.| 
Mouse   440 TEDTSGSPSRASRVSSGSRLAQQTV---ATGVVNIDEVDPEGRFVRLKNSSDKDQSLGNWRIKRQ 501

  Fly   512 IAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNNLVMKKK--WPVANSMRSVLANADKE 573
            :...|::|:||:....:..|.:||:|:..||..|.||:.||.|.:  |....|.|:.|.:||.|
Mouse   502 VLEGEDIAYKFTPKYVLRAGQTVTVWAAGAGATHSPPSTLVWKSQTNWGPGESFRTALVSADGE 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 144/362 (40%)
ATP-synt_B <67..>142 CDD:304375 29/74 (39%)
MreC <178..>224 CDD:302802 27/52 (52%)
LTD 473..574 CDD:279300 37/104 (36%)
Lmnb2NP_034852.3 Filament 42..398 CDD:306535 144/362 (40%)
LTD 465..569 CDD:307195 37/101 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 270 1.000 Domainoid score I1818
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7818
Inparanoid 1 1.050 391 1.000 Inparanoid score I1969
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48052
OrthoDB 1 1.010 - - D204815at33208
OrthoFinder 1 1.000 - - FOG0001052
OrthoInspector 1 1.000 - - mtm8905
orthoMCL 1 0.900 - - OOG6_103212
Panther 1 1.100 - - O PTHR45721
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2618
SonicParanoid 1 1.000 - - X632
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1414.010

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