DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt86

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_034797.1 Gene:Krt86 / 16679 MGIID:109362 Length:486 Species:Mus musculus


Alignment Length:398 Identity:103/398 - (25%)
Similarity:175/398 - (43%) Gaps:70/398 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRE--TSNLKAVYEKELAAARK 105
            :.:|||:::.||.:.|.:||::|.||.:|..|..:....|   ||:  .||::.::|..:.|.| 
Mouse   103 KHEEKEQIKCLNSKFAAFIDKVRFLEQQNKLLETKWQFYQ---NRKCCESNMEPLFEGYIEALR- 163

  Fly   106 LLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADR 170
                  :|...:|.|..||              ..|...|:.:...|:.||.|            
Mouse   164 ------REAECVEADSGRL--------------AAELNHAQESMEGYKKRYEE------------ 196

  Fly   171 KKFEDQAKELAL----ENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELT 231
                    |::|    |||.:.     |:|.::...|.:.|||...::|.:|..|..:::.:|..
Mouse   197 --------EVSLRATAENEFVA-----LKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEETR 248

  Fly   232 ETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRA 296
            ...|  .|..:.|..::....:..:...:.|::.||:.....:|.|.|..|..:.:.:||...|.
Mouse   249 ILHS--HISDTSIVVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEIKATVIRH 311

  Fly   297 AQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQ 361
            .:......||:..:...|..|.|:::|.:..|..|.|.:.:.|...:.........:|.||..||
Mouse   312 GETLRRTREEINELNRMIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALADARCKLAELEGALQ 376

  Fly   362 RMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTAS 426
            :.:.:||..|:|||.:|:.|:.||:||..|.:||.|||:||          ..|:   ||.....
Mouse   377 KAKQDMACLLKEYQEVMNSKLGLDVEITTYRRLLEGEEQRL----------CEGV---GSVNVCV 428

  Fly   427 ASSRSGRV 434
            :|||.|.|
Mouse   429 SSSRGGVV 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 93/361 (26%)
PRK13922 154..>221 CDD:473155 16/70 (23%)
LTD 474..574 CDD:460003
Krt86NP_034797.1 Head 1..106 0/2 (0%)
Keratin_2_head <3..102 CDD:465068
Filament 105..416 CDD:459643 93/361 (26%)
Coil 1A 107..141 12/33 (36%)
Linker 1 142..151 4/11 (36%)
Coil 1B 152..252 29/145 (20%)
Linker 12 253..269 2/15 (13%)
Coil 2 270..413 40/142 (28%)
Tail 414..486 11/36 (31%)
Blue background indicates that the domain is not in the aligned region.

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