DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and KRT28

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_853513.2 Gene:KRT28 / 162605 HGNCID:30842 Length:464 Species:Homo sapiens


Alignment Length:468 Identity:114/468 - (24%)
Similarity:197/468 - (42%) Gaps:105/468 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 EKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDET 110
            ||..:|:||||||.|:|.:|.||..|:.|.::              :|..|||....:.:.||. 
Human    86 EKVTMQNLNDRLASYLDNVRALEEANAELERK--------------IKGWYEKYGPGSCRGLDH- 135

  Fly   111 AKEKAKLEIDIKRLWEENDDLKPR-LDKKTKEATV--AENNARLYENRYNEVNGKYNQSLADRKK 172
                     |..|.....:|||.: :...|..|.|  ..:||||..:.:             |.|
Human   136 ---------DYSRYHLTIEDLKNKIISSTTTNANVILQIDNARLAADDF-------------RLK 178

  Fly   173 FEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETR--- 234
            :|:   ||.| ::.:...::.||:.|:..||.|.|.|.|.:||.||:.:..:.|.:|:...:   
Human   179 YEN---ELTL-HQNVEADINGLRRVLDELTLCRTDQELQYESLSEEMTYLKKNHEEEMKALQCAA 239

  Fly   235 -SRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQ 298
             ....:|::...|       ..|...|..:|.:||.....||::.|..::.:..:|:...:..:.
Human   240 GGNVNVEMNAAPG-------VDLAVLLNNMRAEYEALAEQNRKDAEAWFNEKSASLQQQISHDSG 297

  Fly   299 GSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRM 363
            .:..|..::..||..:..|..:||:|..|...|...:.|.|:...|:..:....|.:||.:|.::
Human   298 AATFARSQLTEMRRTLQTLEIQLQSLMATKHSLECSLTETESNYCTQLAQIQAQIGALEEQLHQV 362

  Fly   364 RDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASAS 428
            |.|...|..||:.|:|:||.|:.||..|.:|:.|:                          .::.
Human   363 RTETEGQKLEYEHLLDVKVHLEKEIETYCRLIDGD--------------------------GNSC 401

  Fly   429 SRSGRVTPSGRRSATPGISGSSAVKRR--RTVIDESEDRTLSEYSVNAAAKGDLEIIEA---DVE 488
            |:|     .|..|.:||.|.....|..  :||::|.:.|.              :::.:   .:|
Human   402 SKS-----KGFGSGSPGNSSKDLSKTTLVKTVVEELDQRG--------------KVLSSRIHSIE 447

  Fly   489 GRFIKLHNKGTEE 501
            .:..|:.|..||:
Human   448 EKTSKMTNGKTEQ 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 97/361 (27%)
PRK13922 154..>221 CDD:473155 19/66 (29%)
LTD 474..574 CDD:460003 5/31 (16%)
KRT28NP_853513.2 Head. /evidence=ECO:0000255 1..85
Filament 85..396 CDD:459643 96/357 (27%)
Coil 1A. /evidence=ECO:0000255 86..121 17/48 (35%)
Linker 1. /evidence=ECO:0000255 122..143 7/30 (23%)
Coil 1B. /evidence=ECO:0000255 144..235 31/107 (29%)
Linker 12. /evidence=ECO:0000255 236..258 3/28 (11%)
Coil 2. /evidence=ECO:0000255 259..397 38/137 (28%)
Tail. /evidence=ECO:0000255 398..464 17/82 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 443..464 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

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