DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LamC and Lmnb1

DIOPT Version :9

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_446357.2 Gene:Lmnb1 / 116685 RGDID:620522 Length:587 Species:Rattus norvegicus


Alignment Length:562 Identity:205/562 - (36%)
Similarity:327/562 - (58%) Gaps:30/562 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 STSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNL 80
            :|:|||...:.|......:|.||||.||.||||||:.||||||.|||::|:||.|||.|..::..
  Rat     2 ATATPVQQRAGSRASAPATPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTE 66

  Fly    81 AQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVA 145
            .::...||.:.|||:||.|||.||:.||:||:|:|||:|::.:...|:|.|.....||..:.:.|
  Rat    67 REEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKFKAEHDQLLLNYAKKESDLSGA 131

  Fly   146 ENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLEN 210
            :...|.||...|..:.....:|.|:|..|...::|..:..:|...|...:|||..|||.:|||||
  Rat   132 QIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLSAAKKQLADETLLKVDLEN 196

  Fly   211 QNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINR 275
            :.|||.|:|.|:..::.:|:.|||.:.:..:.|:|.....:||.||.|:|.|:|:|::.|:|:.:
  Rat   197 RCQSLTEDLEFRKNMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLYK 261

  Fly   276 EEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELEN 340
            ||:|..|..:::|.:.::.........|.||:...|.:|:.|:::|.||:..:.....||:|||:
  Rat   262 EELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELED 326

  Fly   341 LLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIE 405
            :|..||....:.::..|.|:..:||:|..||.:|:.|:|:|::||:||:||.|||.|||.||.: 
  Rat   327 MLAKERDNSRRMLSDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL- 390

  Fly   406 SPGRPTTDSGISSNGSHLTAS--ASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLS 468
            ||          |..|.:|.|  :||||.|.|..               ||:|..::|||..:..
  Rat   391 SP----------SPSSRVTVSRASSSRSVRTTRG---------------KRKRVDVEESEASSSV 430

  Fly   469 EYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGAS 533
            ..|.:|:|.|::.|.|.||:|:||:|.|...::..:.||::.|..||..:::|::....:..|.:
  Rat   431 SISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQT 495

  Fly   534 VTIWSVDAGTAHDPPNNLVMKKK--WPVANSMRSVLANADKE 573
            ||:|:.:||....||.:|:.|.:  |.....::.||.|:..|
  Rat   496 VTVWAANAGVTASPPTDLIWKNQNSWGTGEDVKVVLKNSQGE 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:278467 139/355 (39%)
ATP-synt_B <67..>142 CDD:304375 32/74 (43%)
MreC <178..>224 CDD:302802 20/45 (44%)
LTD 473..574 CDD:279300 33/103 (32%)
Lmnb1NP_446357.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29 10/26 (38%)
Head 2..34 14/31 (45%)
Filament 31..387 CDD:365827 139/355 (39%)
Coil 1A 35..69 18/33 (55%)
Linker 1 70..81 4/10 (40%)
Coil 1B 82..215 50/132 (38%)
Linker 2 216..243 8/26 (31%)
Coil 2 244..386 51/141 (36%)
Tail 387..587 54/177 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 390..432 18/67 (27%)
Nuclear localization signal. /evidence=ECO:0000255 415..420 3/4 (75%)
LTD 439..542 CDD:395746 31/99 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 550..587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 270 1.000 Domainoid score I1753
eggNOG 1 0.900 - - E1_KOG0977
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 392 1.000 Inparanoid score I1917
OMA 1 1.010 - - QHG48052
OrthoDB 1 1.010 - - D204815at33208
OrthoFinder 1 1.000 - - FOG0001052
OrthoInspector 1 1.000 - - mtm9150
orthoMCL 1 0.900 - - OOG6_103212
Panther 1 1.100 - - O PTHR45721
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X632
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.