Sequence 1: | NP_001260974.1 | Gene: | LamC / 36615 | FlyBaseID: | FBgn0010397 | Length: | 640 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_446357.2 | Gene: | Lmnb1 / 116685 | RGDID: | 620522 | Length: | 587 | Species: | Rattus norvegicus |
Alignment Length: | 562 | Identity: | 205/562 - (36%) |
---|---|---|---|
Similarity: | 327/562 - (58%) | Gaps: | 30/562 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 STSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNL 80
Fly 81 AQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVA 145
Fly 146 ENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLEN 210
Fly 211 QNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINR 275
Fly 276 EEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELEN 340
Fly 341 LLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIE 405
Fly 406 SPGRPTTDSGISSNGSHLTAS--ASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLS 468
Fly 469 EYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGAS 533
Fly 534 VTIWSVDAGTAHDPPNNLVMKKK--WPVANSMRSVLANADKE 573 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LamC | NP_001260974.1 | Filament | 45..401 | CDD:278467 | 139/355 (39%) |
ATP-synt_B | <67..>142 | CDD:304375 | 32/74 (43%) | ||
MreC | <178..>224 | CDD:302802 | 20/45 (44%) | ||
LTD | 473..574 | CDD:279300 | 33/103 (32%) | ||
Lmnb1 | NP_446357.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..29 | 10/26 (38%) | |
Head | 2..34 | 14/31 (45%) | |||
Filament | 31..387 | CDD:365827 | 139/355 (39%) | ||
Coil 1A | 35..69 | 18/33 (55%) | |||
Linker 1 | 70..81 | 4/10 (40%) | |||
Coil 1B | 82..215 | 50/132 (38%) | |||
Linker 2 | 216..243 | 8/26 (31%) | |||
Coil 2 | 244..386 | 51/141 (36%) | |||
Tail | 387..587 | 54/177 (31%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 390..432 | 18/67 (27%) | |||
Nuclear localization signal. /evidence=ECO:0000255 | 415..420 | 3/4 (75%) | |||
LTD | 439..542 | CDD:395746 | 31/99 (31%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 550..587 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 270 | 1.000 | Domainoid score | I1753 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0977 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 392 | 1.000 | Inparanoid score | I1917 |
OMA | 1 | 1.010 | - | - | QHG48052 | |
OrthoDB | 1 | 1.010 | - | - | D204815at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001052 | |
OrthoInspector | 1 | 1.000 | - | - | mtm9150 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103212 | |
Panther | 1 | 1.100 | - | - | O | PTHR45721 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X632 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.840 |