DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and NES

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_006608.1 Gene:NES / 10763 HGNCID:7756 Length:1621 Species:Homo sapiens


Alignment Length:437 Identity:109/437 - (24%)
Similarity:169/437 - (38%) Gaps:119/437 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 QEKEELQHLNDRLACYIDRMRNLENENSRLTQELN--LAQDTVNRETSNLKAVYEKELAAARKLL 107
            :|..::..||.||..|:.|::.||.:|..|:.||.  .||   :.:|| .:|..:.||||.|.|:
Human     7 EESFQMWELNRRLEAYLARVKALEEQNELLSAELGGLRAQ---SADTS-WRAHADDELAALRALV 67

  Fly   108 DETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKK 172
            |:..:||...|:....|.||.:.:..|                                      
Human    68 DQRWREKHAAEVARDNLAEELEGVAGR-------------------------------------- 94

  Fly   173 FEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRR 237
                .::|.|..||...::...|:.:|||..||..|.:|...|..||......|.:|.....::.
Human    95 ----CQQLRLARERTTEEVARNRRAVEAEKCARAWLSSQVAELERELEALRVAHEEERVGLNAQA 155

  Fly   238 QI----------------EISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEI 286
            ..                |:.|:..||.               :.:.|.:|..:|.:..: :..:
Human   156 ACAPRCPAPPRGPPAPAPEVEELARRLG---------------EAWRGAVRGYQERVAHM-ETSL 204

  Fly   287 QNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLD---TERQR 348
            ...:....||.||:    .|.||          :||.|:....||..|...||..|:   .||.|
Human   205 GQARERLGRAVQGA----REGRL----------ELQQLQAERGGLLERRAALEQRLEGRWQERLR 255

  Fly   349 HNQ----YIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGR 409
            ..:    .:.:||.|.|.::.::|..|:..|.|..:|:||.||:|.|..||..|..||  ::|| 
Human   256 ATEKFQLAVEALEQEKQGLQSQIAQVLEGRQQLAHLKMSLSLEVATYRTLLEAENSRL--QTPG- 317

  Fly   410 PTTDSGISSNGSHLTASASSRSGRV----TPSGRR--SATPGISGSS 450
                     .||..:.|.......:    ||.|||  |..|.:|.:|
Human   318 ---------GGSKTSLSFQDPKLELQFPRTPEGRRLGSLLPVLSPTS 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 93/380 (24%)
PRK13922 154..>221 CDD:473155 15/66 (23%)
LTD 474..574 CDD:460003
NESNP_006608.1 Head 1..7 109/437 (25%)
Filament 7..312 CDD:459643 93/380 (24%)
Coil 1A 8..43 13/34 (38%)
SMC_prok_B <14..827 CDD:274008 108/430 (25%)
Linker 1 44..55 4/14 (29%)
Coil 1B 56..151 31/136 (23%)
Linker 12 152..173 0/20 (0%)
Coil 2A 174..192 5/32 (16%)
Linker 2 193..195 0/1 (0%)
Coil 2B 196..313 37/131 (28%)
Tail 314..1621 14/52 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 439..490
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 670..788
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 895..1593
Blue background indicates that the domain is not in the aligned region.

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