DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and Krt72

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_998893.1 Gene:Krt72 / 105866 MGIID:2146034 Length:520 Species:Mus musculus


Alignment Length:494 Identity:120/494 - (24%)
Similarity:213/494 - (43%) Gaps:97/494 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRVTLNTRVSRASTSTPVGGAS------------TSSRVGATSPT-----------------SPT 39
            ||:.|::.......:...||||            .|:.:|.|.|:                 :|.
Mouse    55 RRLALSSAGRSGGFTLGHGGASGGRPGGFVGTVFGSAGLGPTCPSVCPPGGIPQVVVNKSLLAPL 119

  Fly    40 RTS--------RQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQD-TVNRETSNLKAV 95
            ...        |.||:|:::.||::.|.:||::|.||.:|..|..:..|.|. .:|....:|:.|
Mouse   120 NVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWELLQQLDLNNSKRSLEPV 184

  Fly    96 YEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVN 160
            :|..::..:|.|:..:.::.:|:.:::.:.|..:|.|.|.:.:....|.|||             
Mouse   185 HESYISNLQKQLEILSGDRVRLDSELRNMREVVEDCKKRYEVEINRRTAAEN------------- 236

  Fly   161 GKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQV 225
                              |..:           |:|.::|..:.:|:|:.:..||.:::.|...:
Mouse   237 ------------------EFVV-----------LKKDVDAAYMNKVELQAKVDSLTDDIKFFKVL 272

  Fly   226 HTQELTETRSRRQIEISEIDGRLS----RQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEI 286
            ...|:.:.:|    .||:....||    ||.:  |...|.|:|.|||.....::.|.|.:|..:|
Mouse   273 FEGEIAQMQS----HISDTSVILSMDNNRQLD--LDSILAEVRAQYEEIAVKSKAETENMYQCKI 331

  Fly   287 QNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQ 351
            |.|:|.|.:..........|:..:...|..:::::.|::...:.|...|.:.|...|...:....
Mouse   332 QELQATAGQHGDDLKHTKSEITEINRLIQRIHSEIGNMKKQCSNLETAIADAEQRGDCALKDARA 396

  Fly   352 YIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGR------P 410
            .:..||..||:.::|:|..|:|:|.||::|::||:|||.|.|||..||.|:..|.|..      .
Mouse   397 KLDQLEGALQQAKEELARMLREHQELMNVKLALDMEIATYRKLLESEESRMAGEYPNSVSISVIS 461

  Fly   411 TTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGS 449
            :|::|....|..:...||| |....|......|.|..||
Mouse   462 STNAGPGGAGFSVGFGASS-SYNYRPLALEVKTKGSCGS 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 92/360 (26%)
PRK13922 154..>221 CDD:473155 8/66 (12%)
LTD 474..574 CDD:460003
Krt72NP_998893.1 Head 1..133 13/77 (17%)
Keratin_2_head 15..130 CDD:465068 12/74 (16%)
Filament 133..446 CDD:459643 92/360 (26%)
Coil 1A 134..169 12/34 (35%)
Linker 1 170..188 5/17 (29%)
Coil 1B 189..280 21/132 (16%)
Linker 12 281..304 8/28 (29%)
Coil 2 305..443 42/137 (31%)
Tail 444..520 16/57 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 494..520 3/6 (50%)
Blue background indicates that the domain is not in the aligned region.

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