DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and LOC100653049

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_003403930.1 Gene:LOC100653049 / 100653049 -ID:- Length:436 Species:Homo sapiens


Alignment Length:398 Identity:115/398 - (28%)
Similarity:185/398 - (46%) Gaps:97/398 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 EKEELQHLNDRLACYIDRMRNLENENS---RLTQELNLAQDTV--NRETSNLKAVYEKELAAARK 105
            |||.:|.||||||.|::::|.||.:|:   :|.||.:..|:.:  ....|..|.:.|.:    :|
Human    98 EKETMQFLNDRLASYLEKVRQLERDNAELEKLIQERSQQQEPLLCPSYQSYFKTIEELQ----QK 158

  Fly   106 LLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADR 170
            :|...| |.|:|.::|                         :||:|..:.:             |
Human   159 ILCAKA-ENARLVVNI-------------------------DNAKLASDDF-------------R 184

  Fly   171 KKFE-DQAKELALENE--RLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTE 232
            .|:: :|:..|.:|::  .:||.||:|       ||.:.|||:|.:||||||....:.|.:|:..
Human   185 SKYQTEQSLRLLVESDINSIRRILDEL-------TLCKSDLESQVESLREELICLKKNHEEEVNT 242

  Fly   233 TRSRRQIEISEIDGRLSRQYE----AKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNL-KAA 292
            .|       |::..||:.:.:    ..|.|.|.|.|.|||..:..||.|:|..:..:.:.| |..
Human   243 LR-------SQLGDRLNVEVDTAPTVDLNQVLNETRSQYEALVETNRREVEQWFATQTEELNKQV 300

  Fly   293 ANRAAQGSALATEEVRLMRTKIDGLNAKLQ---NLEDTNAGLNARIRELENLLDTERQRH----- 349
            .:.:.|..:...|.:.|.|| ::.|..:||   ||.|:          |||.| ||.:.|     
Human   301 VSSSEQLQSCQAEIIELRRT-VNALEIELQAQHNLRDS----------LENTL-TESEAHYSSQL 353

  Fly   350 ---NQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPT 411
               ...|.::|::|..:|.::..|.||||.|:|::..|:.||..|..||..|:.:|    |..|.
Human   354 SQVQSLITNVESQLAEIRCDLERQNQEYQVLLDVRARLECEINTYRSLLESEDCKL----PCNPC 414

  Fly   412 TDSGISSN 419
            ..:..|.|
Human   415 ATTNASGN 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 110/378 (29%)
PRK13922 154..>221 CDD:473155 22/69 (32%)
LTD 474..574 CDD:460003
LOC100653049XP_003403930.1 Filament 97..408 CDD:459643 110/378 (29%)
Blue background indicates that the domain is not in the aligned region.

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