DRSC/TRiP Functional Genomics Resources

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Protein Alignment LamC and krt23

DIOPT Version :10

Sequence 1:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_031750290.1 Gene:krt23 / 100491563 XenbaseID:XB-GENE-22060952 Length:416 Species:Xenopus tropicalis


Alignment Length:447 Identity:119/447 - (26%)
Similarity:203/447 - (45%) Gaps:87/447 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RVSRASTSTPVGGASTSSRVGATS----PTSP----------TRTSRQQEKEELQHLNDRLACYI 61
            |:|.:|:|:..|  |..||...:.    |:||          ...|....||.:|:||||||.|:
 Frog    22 RISSSSSSSHSG--SNGSRTCISKPNPFPSSPGTFDCTMDFRETLSAPNGKETMQNLNDRLASYL 84

  Fly    62 DRMRNLENENSRLTQELNLAQDTVNRETSNLK--AVYEKELAAARKLLDETAKEKAKLEIDIKRL 124
            :::|:||..|:.|..::.|...  ||..::.:  :||||.:...:..|.:.....||:::.::  
 Frog    85 EKVRSLEEANTGLESKIQLWHR--NRAQNHKRDYSVYEKTIGELQSQLVDGHMNGAKIKLQME-- 145

  Fly   125 WEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFE-DQAKELALEN--ER 186
                                   ||:|..:.:             ::|:| ::....|||.  |.
 Frog   146 -----------------------NAKLAFDAF-------------KRKYETEKTIRTALEGDLES 174

  Fly   187 LRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQ 251
            |||.:|:|       |:.|.|||.:.:.:|:||.:....|.:::  ..::.|.:.:.:|.::...
 Frog   175 LRRAMDNL-------TIVRTDLEMEVEGMRKELIYMRMGHEEDI--KLAQFQKKGASVDVKIDAP 230

  Fly   252 YEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDG 316
            ....|.:::.|:|.:||..:..||.|....|.::..:::...|.       .||.::..|.:|..
 Frog   231 PSVDLAKTIAEIRKEYETLIEKNRREASEWYSHQSSSVQQEVNS-------NTEALQNSRNQIKD 288

  Fly   317 LNAKLQNLEDTNAGLNARIRELE-NLLDTER------QRHNQYIASLEAELQRMRDEMAHQLQEY 374
            |...||.||....|...|...|| .|.:||.      |:....|..:||||..:|.|:..|..||
 Frog   289 LKRTLQTLEIELQGEIRRKHGLEGTLAETEANAAGQLQKIQATICRMEAELSNVRGELERQNIEY 353

  Fly   375 QGLMDIKVSLDLEIAAYDKLLCGEE---RRLNIESPGRPTTDSGISSNGSHLTASAS 428
            :.|:|:|..|:.|||.|.:||.|::   |..|.|..|:.||......||..:::..|
 Frog   354 RALLDVKTRLENEIATYRELLEGDKTGGRSRNSEGGGKITTIVQDMVNGRVISSKVS 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LamCNP_001260974.1 Filament 45..401 CDD:459643 98/370 (26%)
PRK13922 154..>221 CDD:473155 19/69 (28%)
LTD 474..574 CDD:460003
krt23XP_031750290.1 Filament 68..376 CDD:459643 97/363 (27%)
Blue background indicates that the domain is not in the aligned region.

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