DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ttv and rib-2

DIOPT Version :9

Sequence 1:NP_001356963.1 Gene:ttv / 36614 FlyBaseID:FBgn0265974 Length:772 Species:Drosophila melanogaster
Sequence 2:NP_499368.1 Gene:rib-2 / 176502 WormBaseID:WBGene00004361 Length:814 Species:Caenorhabditis elegans


Alignment Length:863 Identity:207/863 - (23%)
Similarity:345/863 - (39%) Gaps:272/863 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 RLKVSPLR----------PRRAQHESAKDGGVQPHEQLPSFLGAHDMQELQLLQSNQSKSLDSSK 80
            ::|:..:|          |::....||.:|.::..::        .::||:..| |....|..|.
 Worm    91 QVKIEEIRTVQEELQRLIPQKQLELSALEGEIEAAQR--------QLEELRETQ-NVKVFLPFSP 146

  Fly    81 HLVTRK--------PDCRMETCFDFTRCYDRFLVYIYPPEPLNSLGAAPPTSANYQKILTAIQES 137
            ..:.|:        |: :::...|::||               |:.:..|.   |..|:|:.|..
 Worm   147 LQIPRELEQPSQISPN-QLDDIIDYSRC---------------SISSFMPV---YVDIITSGQSE 192

  Fly   138 RYY-----------TSDPTAACLFVLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNL 191
            :.:           ...|..||:.:                                  ||...:
 Worm   193 KEWLNVFQEVIPNLVETPDKACIKI----------------------------------HISNGI 223

  Fly   192 YSGTWPDYAENSLGFDAGEAILAKASMGVLQLRHGFDVSIPLFHKQFPLRAGATGTVQSNNFPAN 256
            .|   |:...||:.|:.|..|:...|..:              |.|       ...::|.:||.:
 Worm   224 AS---PNTTFNSILFNVGSPIINFQSKSI--------------HVQ-------ASKIRSFDFPVD 264

  Fly   257 KKY----------LLAFKGKRYVHGIGSETR------NSLFHLHNGRDMVLVTTCRHGKSWRELQ 305
            ..:          ||.|:.:..:..|...|.      :||....:.|.:|:|             
 Worm   265 VNHIAVEKVDLTPLLPFQRENLISLIVDNTELNFSAFSSLSAEPSRRPIVIV------------- 316

  Fly   306 DNRCDEDNREYDRYDYETLLQNSTFC-LVPRGRRLGSFRFLEALQAGCIPVLLSNAWVLPFESKI 369
              :|.::|...:|  ...|:.:|||| |:|  ..:....||.:||.||||::|||:.:|||:..|
 Worm   317 --KCSQENCSLER--RRQLIGSSTFCFLLP--SEMFFQDFLSSLQLGCIPIILSNSQLLPFQDLI 375

  Fly   370 DWKQAAIWADERL-LLQVPD---IVRSIPAERIFALRQQTQVLWERYFGSIEKIVFTTFEIIRER 430
            ||::|..    || |.::|:   ||:|.....|..:|:..::.:|.|......:..:....:|.:
 Worm   376 DWRRATY----RLPLARLPEAHFIVQSFEISDIIEMRRVGRLFYETYLADRHLLARSLLAALRYK 436

  Fly   431 L--PDYPVRSSL---VWNSS----PGALLT-------------LPTFADSSRY------------ 461
            |  |...||.:.   ::|||    .|:::.             |.:..:|:.|            
 Worm   437 LQIPTREVRRNQAIPLFNSSFTAPKGSVVNVQANFDDEYLLGPLESRVESTSYAYNFTEFQLYSY 501

  Fly   462 ------------MPFLLNS-----------------------MGAE---------PRHNYTAVI- 481
                        ..||:|:                       .|||         .|..:|.|: 
 Worm   502 DFWNIIMSPHYTKEFLVNAAELPTEAEFFEDTKIGFRPIEPGSGAEFSKALGGNRQREQFTVVLL 566

  Fly   482 -YVQIGAALGPNAALYKLVRTITKSQFVERILVLW-AADRPLPLKKRWPPTSHIPLHVISLGGST 544
             |.:.....|....|::|       .::.:|:|:| ..:|..|  ..| |:.|||:..|.:..: 
 Worm   567 TYERDAVLTGALERLHQL-------PYLNKIIVVWNNVNRDPP--DTW-PSLHIPVEFIRVAEN- 620

  Fly   545 RSQGAGPTSQTTEGRPSISQRFLPYDEIQTDAVLSLDEDAILNTDELDFAYTVWRDFPERIVGYP 609
                            :::.||:|:|.|:|:||||||:|..|...|:..|:.|||:..:||||:|
 Worm   621 ----------------NLNNRFVPWDRIETEAVLSLDDDIDLMQQEIILAFRVWRENRDRIVGFP 669

  Fly   610 ARAHF-WDDSKNAWGYTSKWTNYYSIVLTGAAFYHRYYNYLYTNWLSLLLLKTVQQSSNCEDILM 673
            ||.|. :.||   ..|.|..|...|::||||||.|:.|...||..:...:.:.|....|||||.|
 Worm   670 ARHHARYGDS---MFYNSNHTCQMSMILTGAAFIHKNYLTAYTYEMPAEIREHVNSIKNCEDIAM 731

  Fly   674 NLLVSHVTRKPPIKVTQRKGYKDRETGRSPWNDPDHFIQRQSCLNTFAAVFGYMPLIRSNLRMDP 738
            |.||||:|||||||.|.|...|......|.:.:..||.:|..|:..|..::||.||..|..|.|.
 Worm   732 NYLVSHLTRKPPIKTTSRWTLKCPTCTESLYKEGTHFEKRHECMRLFTKIYGYNPLKFSQFRADS 796

  Fly   739 MLYRDPV-SNLRKKYRQI 755
            :|::..: .|.:|.::.:
 Worm   797 ILFKTRLPQNHQKCFKYV 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttvNP_001356963.1 Exostosin 102..393 CDD:335188 68/322 (21%)
Glyco_transf_64 477..737 CDD:337333 94/263 (36%)
rib-2NP_499368.1 DUF904 85..>138 CDD:283624 9/55 (16%)
Exostosin 175..399 CDD:281069 67/307 (22%)
Glyco_transf_64 561..791 CDD:286358 92/259 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314330at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X187
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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