DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Achl and LARP6b

DIOPT Version :9

Sequence 1:NP_001286419.1 Gene:Achl / 36605 FlyBaseID:FBgn0033936 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_566004.1 Gene:LARP6b / 819002 AraportID:AT2G43970 Length:545 Species:Arabidopsis thaliana


Alignment Length:551 Identity:118/551 - (21%)
Similarity:202/551 - (36%) Gaps:109/551 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 SAPPMSPTDHQLVDVGMGSSIGDSDESSEEGDE--LKPLAVDNHIIAEVDLTERQTTPPAVLSEA 187
            |.||.:.:|    |:....|...:..:|...|.  |:.|::........:....:||||  |.:.
plant    10 STPPPTQSD----DLSHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTPP--LPQP 68

  Fly   188 N---LEKFRKHQMDNIYLH-PNFTLDASPPPAVAPANSPVLEAKRTHRSFLTMKKEKEVEPPQEK 248
            .   :.....|.|.::|.| |.|......|..:.|...||......||.     .:.......:.
plant    69 PRMIIPPPPPHGMLHMYHHQPPFNTPVLGPVPIQPHLVPVQNHHPHHRF-----HQHHHHNRHQN 128

  Fly   249 EQEVPVHQEQDTEPQG-------PNEI----DTLDPSLIPS---------------------EEL 281
            :|.|||....:.:.:|       |:.:    |..|.|...|                     |:.
plant   129 QQYVPVRNHGEYQQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVSIDSKTGLPEDS 193

  Fly   282 AAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVGDAVRRKSR 346
            ..:|.:.||:|||:.::.....|::.:.::.||:|.:.:|:|||:::.:......:. ||.:.|.
plant   194 IQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLA-AVLQNSA 257

  Fly   347 KIELNDVGTKVRRIEPL-PSFDETMPSRTIVACDLPLDKLTIEKVSDLFSPCGEIALIRILKP-- 408
            |:.:::.|.|||||.|: .|..|.:.||.|||.:||.|. ..:.:..:||..|.:..||..:|  
plant   258 KLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDH-CYQNLMKIFSTVGSVKNIRTCQPQN 321

  Fly   409 -GMAIPVDVRQ--------FMNK------YPELQQKECALVEYLESSSARDARHLNGPFQVYEMV 458
             |...|...|.        |.||      |..::..|.|:.|..|:.:.|....:....: ::..
plant   322 NGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAGNWRSGLKVRLMLK-HQTK 385

  Fly   459 APKKKTGK-------------KAAVIQIAAPVARMVENYRYYNDANYERSRGGSFSGHETVPDLR 510
            .||:..|:             ..|......|:.:..::.....|.:.:....|...|:|.....|
plant   386 EPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQR 450

  Fly   511 FKLKR-----------------NNSDFQPSYYQQTGPSYHANPYQHY---QPRGSIGNQNQEVGP 555
            ....|                 ||:......:...|...|.:.:.|.   ||..:..|..::.|.
plant   451 KGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGM 515

  Fly   556 NGFFGYGPRRYSNTSTISANTAAALGDVSPI 586
            ......|||....|...|      :|...|:
plant   516 GKQQPPGPRMPDGTRGFS------MGRGKPV 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AchlNP_001286419.1 LARP_6 282..359 CDD:153402 21/76 (28%)
RRM_LARP6 373..472 CDD:240735 29/128 (23%)
LARP6bNP_566004.1 LARP_6 194..270 CDD:153402 21/76 (28%)
RRM_La_like_plant 285..380 CDD:240734 25/95 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5193
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm2425
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22792
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.870

Return to query results.
Submit another query.