DRSC/TRiP Functional Genomics Resources

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Protein Alignment Achl and larp6l

DIOPT Version :10

Sequence 1:NP_610964.1 Gene:Achl / 36605 FlyBaseID:FBgn0033936 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_001072636.1 Gene:larp6l / 780092 XenbaseID:XB-GENE-5806148 Length:481 Species:Xenopus tropicalis


Alignment Length:472 Identity:128/472 - (27%)
Similarity:201/472 - (42%) Gaps:116/472 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 NSPVLEAKRTHRSFLTMKKEKEVEPPQEKEQEVPVHQEQDTEPQG---------------PNEID 269
            :||...::|:..|                .:.:||..:|.:...|               .:.:|
 Frog     2 SSPCCSSQRSPSS----------------SRSIPVGVQQHSFDSGLVLRERNNSSCHHSQNDHLD 50

  Fly   270 TLDPSL-----------------IPSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVS 317
            :||.|.                 ||..:|..:|...||||.|:|::..||||||||::||.|:||
 Frog    51 SLDGSFFDFTETLDDSSYEGDSGIPDLKLVRKIVSQVEFYLSDENLSHDAFLLKHVQKNKMGYVS 115

  Fly   318 LKLVSSFKRVRQLTREWKVVGDAVRRKSRKIELNDVGTKVRRIEPLPSF-------------DET 369
            :||::|||:::.|||:|:....|: |.|.::|:|:..|||||..|||.:             :.:
 Frog   116 IKLLTSFKKIKYLTRDWRKTLYAL-RFSEQLEVNEEETKVRRKNPLPDYLLGLPPTKQLLVWNIS 179

  Fly   370 MPSRTIVACDLPLDKLTIEKVSDLFSPCGEIALIRILKPGMAIPVDVRQFMNKYPELQQKECALV 434
            .|.:...:|.   .|..:|.|:.:|:..|.|..|||||||..:|.|:|::|::||||..:.||||
 Frog   180 DPEKRSFSCQ---QKNLMEIVTSVFATYGLITSIRILKPGKEVPSDIRKYMSRYPELSTRNCALV 241

  Fly   435 EYLESSSARDA-RHLNGPFQVYEM----VAPKKKTG-KKAAVIQIA------APVARMV-ENYRY 486
            ||.....||.| ..|:|......:    |.|....| :|..||..|      .|..:|. :..|.
 Frog   242 EYESLEGARKALEALSGKVSSTNIDRIKVIPVSGRGTRKKNVIDTAEQEDLDLPDKKMTRKEIRA 306

  Fly   487 YNDANYERSRGGSFSGHETVPDLRFKLKRNNSDFQPS----YYQQTGPSYHANPYQHYQPRGSIG 547
            .....|.......:|..|             ||..|:    ..:...|...::|...::|     
 Frog   307 MERLQYTTEDSSFYSSSE-------------SDSTPASPVLAPRYLSPLTFSSPSMMFKP----- 353

  Fly   548 NQNQEVGPNGFFGYGPRRYSNTSTISANTAAALG--DVSPISSAVNSGGNPMVSGISSLQRRLSN 610
                     .||. .||    .||:.|..:.:..  :.||::|.:..|..|.........|::.:
 Frog   354 ---------PFFS-SPR----PSTLYARKSLSFSPHNPSPLASELGIGDYPSPGTSPEFSRKILD 404

  Fly   611 CSEQNYTPEVNPSMSRR 627
            .|.:|.....:|.:.||
 Frog   405 HSAENAMSSTSPWVQRR 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AchlNP_610964.1 LARP_6 282..359 CDD:153402 37/76 (49%)
RRM_LARP6 373..472 CDD:409731 38/104 (37%)
SUZ-C 824..855 CDD:463745
larp6lNP_001072636.1 LARP_6 80..156 CDD:153402 37/76 (49%)
RRM_SF 190..271 CDD:473069 32/80 (40%)
SUZ-C <450..469 CDD:463745
Blue background indicates that the domain is not in the aligned region.

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