DRSC/TRiP Functional Genomics Resources

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Protein Alignment Achl and Larp4B

DIOPT Version :9

Sequence 1:NP_001286419.1 Gene:Achl / 36605 FlyBaseID:FBgn0033936 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_647793.1 Gene:Larp4B / 38399 FlyBaseID:FBgn0035424 Length:1531 Species:Drosophila melanogaster


Alignment Length:1036 Identity:189/1036 - (18%)
Similarity:342/1036 - (33%) Gaps:320/1036 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 APHAGAEGHTFLVSPVDP------TPILAPILTAVPVMKAPDSPASMDKTKEMEELDDEQPSCSS 74
            :|.|.|..|..|::....      .|.:||.:...||..|..:.|::...::      :|.:...
  Fly    47 SPAAAAAAHIPLITAAAAAAAAAGAPAVAPPVAVAPVATASAAQAAVVPAQQ------QQQAHPH 105

  Fly    75 QAVVPLSSSLPCKLLRMHARRSAQALLHQMESMDSQLGSSN------GSTSEDTSPSAPPMSPTD 133
            ||.:...:.:..:..:...:::.|..|||.:...|...:.:      .:.|:.|:..:..:|   
  Fly   106 QAQILAHTHVAHQQQQQQQQQTIQQHLHQQQQQQSPHPAQHLTYGHQPALSQATAGGSGTIS--- 167

  Fly   134 HQLVDVGMGSSIGDSDESSEEGDELKPLAVDNHIIAEV-DLTERQTTPPAVLSEANLEKFRKHQM 197
                    |.::|.|. ...||.:....|:.|..:.:. |.|....|..| |:..||        
  Fly   168 --------GGAVGPSG-VVVEGQDTNEYAIMNGALGQTQDGTVVCYTTDA-LNNTNL-------- 214

  Fly   198 DNIYLHPNFTLDASPPPAVAPANSPVLEAKRTHRSFLTMKKEKEVEPPQEKEQEVPVHQEQDTEP 262
                    ..||..|...|.|...||                 :|..|    .::|.:...|.:.
  Fly   215 --------VALDPQPHQIVVPVQVPV-----------------QVPVP----VQLPANGSADPQQ 250

  Fly   263 QGPNEIDTLDPSLIPSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRV 327
            ...|.....:|: ||.::|...:...:|:|||.|::..|.:||..:  :.:.:|.:..|:.|..|
  Fly   251 GSHNAAGGEEPN-IPLDKLKQMLATQLEYYFSRENLANDTYLLSQM--DSDQYVPIYTVARFNLV 312

  Fly   328 RQLTREWKVVGDAVRRKSRKIELNDVGTKV-----------RRIEPLPSFDETMPSRTIVACDLP 381
            |:||.:..::.: |.|:|..::::|.|.:|           |.|......|:.....:..:|..|
  Fly   313 RKLTNDINLITE-VLRESPNVQVDDKGLRVRPNRKRCIIILREISNNTPLDDVKALFSNESCPRP 376

  Fly   382 LD---------KLTIEKVSDLFSPCGEIALIRILKPGMAIPVDVRQFMNKYPELQQKECALVEYL 437
            :.         .:|.|...|            ..|....:..:|::|..|....:.|..:.:..:
  Fly   377 ISCEFAANNSWYITFESDED------------AQKAYKYLREEVKEFQGKPIMARIKPKSFINRI 429

  Fly   438 ESSSARDARHLNGPFQVYEMVAPK-----KKTGKKAAVIQIAAPVARMVENYRYYNDANYERSRG 497
            ::.          |...|.:.:|.     ...|...|.:..|   |.....|.|.|.|.......
  Fly   430 QAV----------PKNGYRLTSPPTANVFDPAGAGGATVSYA---AAQQPRYLYTNGAAIAAPAS 481

  Fly   498 GSFSGHETVPDLRFKLKRNNSDFQP--------------------SYYQQTGPSYHANPYQHY-- 540
            ..:|....:|     :.:|  .|.|                    ::|:..|..:..||....  
  Fly   482 VQYSNPVLIP-----IPQN--QFYPGLVAGPWPPGTVAATTAHGQNFYELGGNIFTTNPLPPQPV 539

  Fly   541 ------------------QPRGSIG--NQNQEVGPNGFFG--YGPRRYSNT----STISANTAAA 579
                              :|:|. |  |.|....||...|  .|||..|.:    ||.||:....
  Fly   540 TAGFAQAPPPTSQAMVTPKPQGG-GRYNNNHRGNPNNVGGANSGPRAESRSKPPRSTPSASHIQG 603

  Fly   580 LGDVSPIS-SAVNSGGNPMVS----------------------GISSLQRRLSNCSEQ------- 614
             |::.||. :|...||  |||                      .|..:|::.|:.::|       
  Fly   604 -GNIMPIQITAPIPGG--MVSVVPTNIVQDPLQPAPLQQQPQQVIQQIQQQPSSSAQQQQAATVQ 665

  Fly   615 ----------------------------------NYTPEVN--PSMSRRASNCSETGGVPQRRD- 642
                                              :||.:|.  |:.|.......:..|..|::. 
  Fly   666 MNNTTRHYPIKSNWKGGMQKNLDKSYSGGVATHHHYTTQVQALPAHSHHLQAQQQLQGQTQQQHY 730

  Fly   643 ---SNCSESCPCSRRVSDFAQTTDTSYRKTSVCSNGSCPGNNQNQER------------------ 686
               |:.:.|.|....|:...........:..:....:.|...|.|::                  
  Fly   731 QLASSSAASAPQVTYVTTAPAPQQPGQHQHHLVVQQTQPQQQQQQQQVVLQQQQVQVQELQEAGD 795

  Fly   687 --RFSNGSMQFERTFSNASESSGFYRRPSNDFNIEREPIQTDQLVGGGGGGYQVWPRRYSN---- 745
              ..|:.:||.....||.|.||.    .|...::.:||:|           :|..|||...    
  Fly   796 GVEHSSHAMQQVNRSSNMSASSS----SSLATSMSKEPLQ-----------WQNRPRRRRRDEEG 845

  Fly   746 --NFQQLSSKLAAYDNA-------QYIGGRRISTDSGYDRRCSFGSEGFEGSPRSRTGSFLSNY- 800
              |:.. ..::..|.::       |::    :|:.:|.:.:.:.|::|  |....|.|...|:| 
  Fly   846 GINYSP-GGRVGLYGSSPSNPHPQQHL----MSSSTGSNVQSAGGTDG--GGASHRGGERQSHYN 903

  Fly   801 --------KHGG---GDGYDGQPRSRTGSFLDGS-PRSRSGSFAQRAAESLVRTPMGPDGS 849
                    :|.|   |:.|:....::..|...|| ......:.:.:..:..:.|..|..||
  Fly   904 TIHDVPPPQHRGNYKGNNYNPHYHAQHSSMASGSHHHHHHNALSSQQQQHHLTTGTGQQGS 964

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AchlNP_001286419.1 LARP_6 282..359 CDD:153402 21/87 (24%)
RRM_LARP6 373..472 CDD:240735 15/112 (13%)
Larp4BNP_647793.1 LARP_4_5_like 269..343 CDD:153400 21/76 (28%)
RRM_LARP4_5_like 348..423 CDD:240876 13/86 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456183
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22792
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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