DRSC/TRiP Functional Genomics Resources

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Protein Alignment Achl and Larp6

DIOPT Version :10

Sequence 1:NP_610964.1 Gene:Achl / 36605 FlyBaseID:FBgn0033936 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_001101624.1 Gene:Larp6 / 315731 RGDID:1308414 Length:492 Species:Rattus norvegicus


Alignment Length:482 Identity:138/482 - (28%)
Similarity:217/482 - (45%) Gaps:113/482 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 LTMKKEKEVEPPQEKEQEVPVHQEQDT--------------EPQ----------GPNEIDTLDPS 274
            :.:::.::||..:|.::........||              ||.          |.|:.:.|:|.
  Rat    20 VAIQEAEDVEDLEEDDEGTSARAAGDTARYLSPGWGSASEEEPSRGHSSATTSGGENDREDLEPE 84

  Fly   275 -LIPSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVG 338
             ..|.|||..::.|.:|||||:|::.|||||||||||||.|:||:||::|||:|:.|||:|:...
  Rat    85 WKPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149

  Fly   339 DAVRRKSRKIELNDVGTKVRRIEPLPSF-DETMPSRTIVACDL------------PLDKLTIEKV 390
            .|: :.|..:|||:...||||..|:|.| :|.:||:.::..||            |.:....|||
  Rat   150 HAL-KYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWSLATPPKNGRVQEKV 213

  Fly   391 SD----LFSPCGEIALIRILKPGMAIPVDVRQFMNKYPELQQKECALVEYLESSSARDARHL--- 448
            .:    ||...|.|:.:||||||..:|.|:|:..::|.::..:|||:||:.|..:|..|...   
  Rat   214 MEYLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFMAT 278

  Fly   449 ------NGPFQVYEMVAPKKKTGK-------KAAVIQIAAPVARMVENYRYYNDANYERSRGGSF 500
                  |....:..|..||||..|       .||..:::..:.:.||..:|..|    .|...|.
  Rat   279 ESQGKENMKAVLIGMRPPKKKPLKDKNHEDEPAAGTRLSRSLNKRVEELQYMGD----ESSANSS 339

  Fly   501 SGHETVPDLRFKLKRN--NSDFQPSYYQQTGPSYHANP--------------YQHYQPRGSIGNQ 549
            |..|:.|......:|:  ::...||.:|....|.:|:|              .....|....|..
  Rat   340 SDPESNPTSPMAGRRHVASNKLSPSGHQNIFLSPNASPCSSPWSSPLAQRKGVSRKSPLAEEGRL 404

  Fly   550 NQEVGPNGFFGYGPRR---YSNTSTISANTAAALGDVSPISSAVNSGGNPMVSGISSLQRRLSNC 611
            |....|..|     |:   ||:.|:|:.:                  |:|.|.     :||.:..
  Rat   405 NFSTSPEIF-----RKCMDYSSDSSITPS------------------GSPWVR-----RRRQAEM 441

  Fly   612 SEQNYTPEVNPSMSRRASNCSETGGVP 638
            ..|..:|..:|.:||:.....   |:|
  Rat   442 GTQEKSPGASPLLSRKMQTAD---GLP 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AchlNP_610964.1 LARP_6 282..359 CDD:153402 40/76 (53%)
RRM_LARP6 373..472 CDD:409731 37/130 (28%)
SUZ-C 824..855 CDD:463745
Larp6NP_001101624.1 LARP_6 93..169 CDD:153402 40/76 (53%)
RRM_LARP6 184..292 CDD:409731 29/107 (27%)
SUZ-C 452..482 CDD:463745 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

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