DRSC/TRiP Functional Genomics Resources

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Protein Alignment Achl and Larp4

DIOPT Version :10

Sequence 1:NP_610964.1 Gene:Achl / 36605 FlyBaseID:FBgn0033936 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_001271452.1 Gene:Larp4 / 207214 MGIID:2443114 Length:720 Species:Mus musculus


Alignment Length:474 Identity:99/474 - (20%)
Similarity:170/474 - (35%) Gaps:137/474 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 PAVAPANSPVLEAKRTHRSFLT--------------MKKEKEV--EPPQEKEQE-VPVHQEQDTE 261
            |:..|..:||.|.. .|.:..|              |.||.||  .|..|..:. ..|.:..|..
Mouse    26 PSGNPDGTPVTEPS-WHETAATSGSHPEGHTELSEDMCKEYEVMYSPSCETTRNTADVEESADGM 89

  Fly   262 PQGPN-------EIDTLDPSLIPSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLK 319
            ..||.       ::.....|.|.:|:|...:...:||.||.|::.||.:|:..:  :.:.||.:.
Mouse    90 ILGPEDLSYQLYDVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIW 152

  Fly   320 LVSSFKRVRQLTREWKVVGDAVRRKSRKIELNDVGTKVRRIEPLPSFDETMPSRTIVACDLPLDK 384
            .|::.:.:::||....::.: |.|.|..:::::.|.|||     ||....:    ::..::| :.
Mouse   153 TVANMEEIKKLTTNTDLILE-VLRSSPMVQVDEKGEKVR-----PSHKRCI----VILREIP-ET 206

  Fly   385 LTIEKVSDLF--SPCGEIALIRILKPGMAIPVDVRQFMNKYPELQQKECALVE----YLESSSAR 443
            ..:|:|..||  ..|.::.                            .|....    |:...|..
Mouse   207 TPVEEVKALFKNENCPKVI----------------------------SCEFAHNSNWYITFQSDT 243

  Fly   444 DARHLNGPFQVYEMVAPKKKTGK-KAAVIQIAAPVARMVEN-YRYYNDANYERSRGGSFSGHETV 506
            ||:      |.::.:..:.||.: |..:.:|.|......:| ||..:.:.|.:    ........
Mouse   244 DAQ------QAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSMYTQ----PIQTPTQY 298

  Fly   507 PDLRFKLKRNNSDFQPSYYQQTGPSYHANPYQHYQ------PRGSIGNQNQEVGPNGFFGYG--- 562
            |...|.....|.. |.|.|.....|:..:|..:::      |.||.        .|||...|   
Mouse   299 PSPVFMQPVYNPQ-QYSVYSLVPQSWSPSPAPYFETPLAPFPNGSF--------VNGFSSPGSYK 354

  Fly   563 ------------PR-------RYSNTSTISANTAAALGDVSPISSA-----VNSGGNPMVSGISS 603
                        |:       |.|:.|..|...:.:||| .|:|.:     ::...||.|:|   
Mouse   355 TNAAAMNMGRPFPKNRVKPHFRSSSGSEHSTEGSVSLGD-GPLSRSSSRIFLSERHNPTVTG--- 415

  Fly   604 LQRRLSNCSEQNYTPEVNP 622
                   ..||.|.|:..|
Mouse   416 -------QQEQTYLPKEAP 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AchlNP_610964.1 LARP_6 282..359 CDD:153402 19/76 (25%)
RRM_LARP6 373..472 CDD:409731 15/105 (14%)
SUZ-C 824..855 CDD:463745
Larp4NP_001271452.1 Interaction with PABPC1. /evidence=ECO:0000250|UniProtKB:Q71RC2 13..22
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..56 7/30 (23%)
Interaction with the poly-A tract of mRNA. /evidence=ECO:0000250|UniProtKB:Q71RC2 108..300 47/242 (19%)
LARP_4 117..191 CDD:153404 20/81 (25%)
RRM_LARP4 196..272 CDD:410106 17/114 (15%)
PHA03247 <320..717 CDD:223021 28/127 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..399 10/35 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 438..471
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 530..563
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..602
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 616..720
Blue background indicates that the domain is not in the aligned region.

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