DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17385 and pita

DIOPT Version :9

Sequence 1:NP_001286418.1 Gene:CG17385 / 36603 FlyBaseID:FBgn0033934 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:253 Identity:74/253 - (29%)
Similarity:111/253 - (43%) Gaps:33/253 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DETVANQFSCKRCDRTFRSKRDQTLHRQEVHNHNKTTYECKLCAKSFCNSGNLDRHMKVHNDVRP 73
            :.|.:..|.|..|:::|.||.|...| ..||. .:..::|.:|:|:|.....|.||.:.|.||..
  Fly   307 NHTRSRSFQCLLCEKSFFSKYDLAKH-NFVHT-GERPFKCAICSKAFTRKALLHRHERTHTDVPK 369

  Fly    74 FVCNICSKAFAQAVNLQRHYAVHSGERPFTCNFCNKSFTQQSNMKRHKMTHTGEKPFRCQRCGRY 138
            |:|..|.|.|.....:::|...|..:|||.|..|.|||..:..::||:..|:...||.||.|.|.
  Fly   370 FICVYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERS 434

  Fly   139 FSQLVNLKKHKLGHLNAKPYQCNYCEKGFTQLSNFKRHLQSHIKEG----------------VDV 187
            ||....|.:|.:.|...:.|.|.||.|.:....:..|||::|.:..                .|:
  Fly   435 FSTASKLARHLVAHAGKRAYPCKYCHKSYMLSHHLSRHLRTHTQTSDASFVCSECKVSYSNYNDL 499

  Fly   188 DVPASIQAAAALARERLESEQKPSFFECMVCRAIFDTFADYEKHEAKCHEDHERAQLE 245
            ...|.|.|.|:|              :|.:||...:.....|.|..: |:..||...|
  Fly   500 LDHALIHATASL--------------KCPMCRKQIEDIDSVESHMDQ-HKQSERHACE 542

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG17385NP_001286418.1 COG5048 <13..181 CDD:227381 57/167 (34%)
C2H2 Zn finger 18..39 CDD:275368 7/20 (35%)
C2H2 Zn finger 48..68 CDD:275368 7/19 (37%)
C2H2 Zn finger 76..96 CDD:275368 5/19 (26%)
C2H2 Zn finger 104..124 CDD:275368 7/19 (37%)
C2H2 Zn finger 132..148 CDD:275368 7/15 (47%)
C2H2 Zn finger 160..180 CDD:275368 7/19 (37%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 61/200 (31%)