DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17385 and che-1

DIOPT Version :9

Sequence 1:NP_001286418.1 Gene:CG17385 / 36603 FlyBaseID:FBgn0033934 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_001076598.1 Gene:che-1 / 183847 WormBaseID:WBGene00000483 Length:273 Species:Caenorhabditis elegans


Alignment Length:109 Identity:49/109 - (44%)
Similarity:68/109 - (62%) Gaps:0/109 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 RPFVCNICSKAFAQAVNLQRHYAVHSGERPFTCNFCNKSFTQQSNMKRHKMTHTGEKPFRCQRCG 136
            :||.|..|.|||:||.||..|..:|:||:||.|..||:.|:|.|::..|:.|||||:|:.|.:|.
 Worm   164 KPFRCQTCGKAFSQAANLTAHKRIHTGEKPFMCPVCNRPFSQSSSLVTHRRTHTGERPYPCAQCE 228

  Fly   137 RYFSQLVNLKKHKLGHLNAKPYQCNYCEKGFTQLSNFKRHLQSH 180
            :.|:....|.||...|...|||.|:.|...|||..|..||:::|
 Worm   229 KAFTDSSTLTKHLRTHTGHKPYVCSICMMKFTQSGNLHRHMKTH 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17385NP_001286418.1 COG5048 <13..181 CDD:227381 49/109 (45%)
C2H2 Zn finger 18..39 CDD:275368
C2H2 Zn finger 48..68 CDD:275368
C2H2 Zn finger 76..96 CDD:275368 10/19 (53%)
C2H2 Zn finger 104..124 CDD:275368 7/19 (37%)
C2H2 Zn finger 132..148 CDD:275368 4/15 (27%)
C2H2 Zn finger 160..180 CDD:275368 8/19 (42%)
che-1NP_001076598.1 zf-C2H2 166..188 CDD:278523 11/21 (52%)
C2H2 Zn finger 168..188 CDD:275368 10/19 (53%)
zf-H2C2_2 180..205 CDD:290200 12/24 (50%)
C2H2 Zn finger 196..216 CDD:275368 7/19 (37%)
zf-H2C2_2 208..232 CDD:290200 9/23 (39%)
C2H2 Zn finger 224..244 CDD:275368 6/19 (32%)
zf-H2C2_2 237..261 CDD:290200 10/23 (43%)
C2H2 Zn finger 252..272 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2111
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

Return to query results.
Submit another query.