DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10104 and Bace2

DIOPT Version :10

Sequence 1:NP_610961.1 Gene:CG10104 / 36602 FlyBaseID:FBgn0033933 Length:404 Species:Drosophila melanogaster
Sequence 2:NP_001002802.1 Gene:Bace2 / 288227 RGDID:1303241 Length:514 Species:Rattus norvegicus


Alignment Length:481 Identity:114/481 - (23%)
Similarity:185/481 - (38%) Gaps:153/481 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WLLVSLLPVLFILPVQFQHPVSCKLQLYRVPLRRFPSARHRFEK---LGI----RMD--RLRLKY 57
            ||| ..:|||...|             :.:||:...:|.||...   ||.    |.|  .|.|:.
  Rat    16 WLL-RAVPVLAPAP-------------FTLPLQVAGAANHRASTVPGLGTPELPRADGLALALEP 66

  Fly    58 AEEVSHFRGEWNSAVKSTPLSNYLDAQYFGPITIGTPPQTFKVIFDTGSSNLWVPSATCASTMVA 122
            |...::|....::....:....||:      :.||||||..:::.||||||..|..|.       
  Rat    67 ARATANFLAMVDNLQGDSGRGYYLE------MLIGTPPQKVRILVDTGSSNFAVAGAP------- 118

  Fly   123 CRVH---NRYF-AKRSTSHQVRGDHFAIHYGSGSLSGFLSTDTVRV-----AGLEIRDQTFAEAT 178
               |   :.|| ::.|:::..:|....:.|..||.:||:..|.|.:     :...:...|..|:.
  Rat   119 ---HSYIDTYFDSESSSTYHSKGFEVTVKYTQGSWTGFVGEDLVTIPKGFNSSFLVNIATIFESE 180

  Fly   179 E--MPGPIFLAAKFDGIFGLAYRSISMQRIKPP------FYAMMEQGLLTKPIFSVYLSRNG--- 232
            .  :||     .|::||.||||.:::    ||.      |.:::.|..: ..|||:.:...|   
  Rat   181 NFFLPG-----IKWNGILGLAYAALA----KPSSSLETFFDSLVAQAKI-PDIFSMQMCGAGLPV 235

  Fly   233 ---EKDGGAIFFGGSNPHYYTGNFTYVQVSHRAYWQVKMDSAVI--RNLEL-CQQ--GCEVIIDT 289
               ..:||::..||..|..|.|:..|..:....|:|:::....|  ::|.| |::  ..:.|:|:
  Rat   236 AGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDS 300

  Fly   290 GTSFLALP---YDQAI-------LINESIGG--------------TPSSFGQFLVPCDSVPDLPK 330
            ||:.|.||   :|..:       ||.|...|              ||.::            .||
  Rat   301 GTTLLRLPQKVFDAVVEAVARTSLIPEFSDGFWTGAQLACWTNSETPWAY------------FPK 353

  Fly   331 ITFTLGGRRFFLESHEYVFRDIYQDRRICSSAFIAVDLP---------------------SPSGP 374
            |:                   ||......|.:|....||                     |.|..
  Rat   354 IS-------------------IYLRDENASRSFRITILPQLYIQPMMGAGFNYECYRFGISSSTN 399

  Fly   375 LWILGDVFLGKYYTEFDMERHRIGFA 400
            ..::|...:..:|..||..:.|:|||
  Rat   400 ALVIGATVMEGFYVVFDRAQRRVGFA 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10104NP_610961.1 pepsin_retropepsin_like 76..400 CDD:472175 92/396 (23%)
Bace2NP_001002802.1 beta_secretase_like 85..446 CDD:133140 94/398 (24%)

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