DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dh44-R1 and gcgrb

DIOPT Version :9

Sequence 1:NP_610960.1 Gene:Dh44-R1 / 36601 FlyBaseID:FBgn0033932 Length:504 Species:Drosophila melanogaster
Sequence 2:XP_009293538.1 Gene:gcgrb / 565237 ZFINID:ZDB-GENE-050516-2 Length:509 Species:Danio rerio


Alignment Length:544 Identity:157/544 - (28%)
Similarity:236/544 - (43%) Gaps:102/544 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LLDLHNLDGIGESVEL----------QCLVQEHIEASTYGNDSGHCLTQFDSILCWPRTARGTLA 72
            :|..|.....|:|::|          :| :|..|  ||.......|...||..:|||....||..
Zfish    11 ILTTHTQVSSGKSLKLLQEQWRIYTNEC-IQSFI--STPPAAGLVCNRTFDQYVCWPDGLPGTTV 72

  Fly    73 VLQCMDEL-------QGIHYDSSKNATRFCHANGTWEKYTNYDACAHLPAPESVPEFEVIVELPT 130
            .:.|...|       .|:.|       |.|.|:|.|....|...|......:.  ::..|:....
Zfish    73 NVSCPWYLPWYSKVDHGLVY-------RVCGADGRWVHGKNTSECEQDDPGQK--QYGQILSKFR 128

  Fly   131 IIYYIGYTLSLVSLSLALIVFAYFKELRCLRNTIHANLFFTYIMSALFWIL---LLSVQISIRSG 192
            .:|.:||:|||.:|:|||.:...|::|.|:||.||.|||.::::.||..::   ||......|||
Zfish   129 AMYTVGYSLSLAALTLALGILVSFRKLHCMRNNIHMNLFGSFMVRALSILIKDTLLDQMNRARSG 193

  Fly   193 --------------VGSCIALITLFHFFTLTNFFWMLVEGLYLYMLVVKTFSGDNLRFNIYASIG 243
                          |..|.:.:.:..:..:.|..|:|||||||:.|:|.|...:...|.||..||
Zfish   194 PSHYQSTRWLDTQTVVGCRSAMVMMQYSVMANNCWLLVEGLYLHSLLVTTVFSERNYFCIYLCIG 258

  Fly   244 WGGPALFVVTWAVAKSLTVTYSTPEKYEINCP---WMQETHVDWIYQGPVCAVLIINLTFLLRIM 305
            ||.|.:||:.|...|.|   |...|.:|.|..   |       ||.:.|:....:||....:||:
Zfish   259 WGAPLIFVLPWMTVKYL---YENEECWERNMNMGYW-------WIIRSPILFAYLINFIIFIRII 313

  Fly   306 WVLITKLRSANTVETRQYR-KAAKALLVLIPLFGI-----TYLVVLAGPSESGLMGHMFAVLRAV 364
            .:|::||: |:.:....|: :.||:.|.||||.||     |:::..:.|.||        :||.:
Zfish   314 KILMSKLK-AHQMRYTDYKFRLAKSTLTLIPLLGIHAVLFTFVIDESVPKES--------LLRLI 369

  Fly   365 LL-------STQGFSVSLFYCFLNSEVRNALRHHISTWRDTRTIQLNQNRRYTTKSFSKGGGSPR 422
            .|       |.||..|::.|||:|.||::.:......|:..:.|.......::....:|...:|.
Zfish   370 RLFYDLLFSSFQGLLVAILYCFVNKEVQSEMLKKWKRWKLGKDIDEEYRHTHSQTPHAKSSTAPP 434

  Fly   423 AESMRPLTSYYGRGKRESCVSSATTTTLV-GQHAPLSLHRGSNNALHTMPTL--AANAMSSGSTL 484
            |....|.||           ||..:..|| |....||..||......|..|.  |:|..|....:
Zfish   435 AAHDCPDTS-----------SSLESQRLVTGLQNGLSRSRGRARLQFTSQTQEGASNCSSLTEDI 488

  Fly   485 SVMPRAISPLMRQG----LEENSV 504
            .:..|   ||..:|    |||.:|
Zfish   489 CLEER---PLNNEGSAAVLEETNV 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dh44-R1NP_610960.1 HRM 52..112 CDD:397086 19/66 (29%)
7tmB1_DH_R 126..394 CDD:320391 97/300 (32%)
TM helix 1 129..153 CDD:320391 10/23 (43%)
TM helix 2 162..183 CDD:320391 8/23 (35%)
TM helix 3 197..219 CDD:320391 5/21 (24%)
TM helix 4 238..254 CDD:320391 9/15 (60%)
TM helix 5 279..302 CDD:320391 5/22 (23%)
TM helix 6 327..349 CDD:320391 10/26 (38%)
TM helix 7 356..381 CDD:320391 10/31 (32%)
gcgrbXP_009293538.1 HRM 50..113 CDD:280888 19/69 (28%)
7tm_2 124..385 CDD:278432 90/279 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4564
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X66
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.